View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1594-Insertion-15 (Length: 689)
Name: NF1594-Insertion-15
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 139 - 410
Target Start/End: Complemental strand, 37550679 - 37550399
Alignment:
| Q |
139 |
aatgggtaatgttaatttaatgggcaaaagatgggtaatggatacagtctgtcactata----acctcttgttatgggcagtgaaaaagtaagaaagcgt |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37550679 |
aatgggtaatgttaatttaatgggcaaaagatgggtaatggatacagtctgtcactatatataacctcttgttatgggcagtgaaaaagttagaaagcgt |
37550580 |
T |
|
| Q |
235 |
ccttgaccatgaccttggtccttatttggcaattgcctttaccaatatatattaacttcttctaagttcttaaattaaccatcatc-----acatggcta |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37550579 |
ccttgaccatgaccttggtccttatttggcaattgcctttaccaatatatattaacttcttctaagttcttaaattaaccatcatcacatcacatggcta |
37550480 |
T |
|
| Q |
330 |
cccactcaatatatagccggtgaaaacaaccagtagcagctatgcacactcactctctctccctcaaaacgcaatgagaag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37550479 |
cccactcaatatatagccggtgaaaacaaccagtagtagctatgcacactcactctctctccctcaaaacgcaatgagaag |
37550399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 506 - 686
Target Start/End: Complemental strand, 37550301 - 37550121
Alignment:
| Q |
506 |
ttcagaacattgccccaccatcaacaacacaaatcttaaacaagttcagagaaatgtgctacgtgggaaaagcaacaaagatcttcatcttcatcgtcac |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37550301 |
ttcagaacattgccccaccatcaacaacacaaatcttaaacaagttcagagaaatgtgctacgtgggaaaagcaacaaagatcttcatcttcatcgtcac |
37550202 |
T |
|
| Q |
606 |
tgctctcgttattactggtctcatcttaggatttggcgtcttacgccgtcaccacaacaacaaatgctccgatcaatcttg |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37550201 |
tgctctcgttattactggtctcatcttaggatttggcgtcttacgccgtcaccacaacaacaaatgctccgatcaatcttg |
37550121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 37550788 - 37550735
Alignment:
| Q |
8 |
aaaatgaatttgtattatgaacaaaacgaaattaaccaattaattactacatta |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37550788 |
aaaatgaatttgtattatgaacaaaacgaaattaaccaattatttactacatta |
37550735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University