View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-Insertion-16 (Length: 822)
Name: NF1594-Insertion-16
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-16 |
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Alignment Details
Target: chr4 (Bit Score: 750; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 8 - 814
Target Start/End: Original strand, 55002318 - 55003130
Alignment:
| Q |
8 |
caaaggtaaccacctacctagatttctataacatagcgaacccaagttctaaatctttgttgttgggagaggtgtccaattcacacgtgttcaacattgg |
107 |
Q |
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| T |
55002318 |
caaaggtaaccacctacctagatttctataacatagcgaacccaagttctaaatctttgttgttgggagaggtgtccaattcacacgtgttcaacattgg |
55002417 |
T |
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| Q |
108 |
ttttctttttcttgatcaggtatccaaccctttgttactctaagtcactataacatcccacaagaactagaagacagatatggggggttgctaagtcccc |
207 |
Q |
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| T |
55002418 |
ttttctttttcttgatcaggtatccaaccctttgttactctaagtcactatgacatcccacaagaactagaagacagatatggggggttgctaagtcccc |
55002517 |
T |
|
| Q |
208 |
aatcacagtaagctaccagtttttcaaatttacctgaagagtcttcaatcacaaattaaccatacaaactcataattaaagatcatgttttttcttttat |
307 |
Q |
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| T |
55002518 |
aatcacagtaagctaccagtttttcaaatttacctgaagagtcttcaatcacaaattaaccatacaaactcataattaaagatcatgttttttcttttat |
55002617 |
T |
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| Q |
308 |
gttcgacgatcagggatgattttgcattttatgcggacctatgttttaaaacatttggtgatagagtaaagttctggatcacattcaacgaaccaaatta |
407 |
Q |
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| T |
55002618 |
gttcgacgagcagggatgattttgcattttatgcggacctatgttttaaaacatttggtgatagagtaaagttctggatcacattcaacgaaccaaatta |
55002717 |
T |
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| Q |
408 |
cctagcatcactcggataccgttccggtctgtttcctccacgtcgttgctctggttcattggcaattgtaacctgcaacgaaggagattctgaaaaggag |
507 |
Q |
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| T |
55002718 |
cctagcatcactcggataccgttccggtctgtttcctccacgtcgttgctctggttcattggcaattgtaacctgcaacgaaggagattctgaaaaggag |
55002817 |
T |
|
| Q |
508 |
ccctttgtagcagcccataatattatcctgtcacatgcagctgcagttgatatctatagaaccaaataccaggtaatatttcttgtttttggttttcata |
607 |
Q |
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| T |
55002818 |
ccctttgtagcagcccataatattatcctgtcacatgcagctgcagttgatatctatagaaccaaataccaggtaatatttcttgtttttggttttcata |
55002917 |
T |
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| Q |
608 |
tatgtacgacattgacactttagattgaatgtgtatcgggtgcctaacatgatgcccaatgcatgtggtacatccaataatttctattatatcaaattat |
707 |
Q |
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| T |
55002918 |
tatgtacgacattgacactttagattgaatgtgtatcgggtgcctaacacgatg-ccaatgcatgtggtacatccaatcatttctattttatcaaattat |
55003016 |
T |
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| Q |
708 |
taccaatgtcaacttgtattttcttggctgatcgacttgatagatttctcaaatcatacgaattatagtta--------atttgattgtaaaacatcgta |
799 |
Q |
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| T |
55003017 |
taccaatgtcaacttgtattttctt-gctgatcgacttgatagatttctcaaatcatacgaattatagttatttgattgatttgattgtaaaacatcgta |
55003115 |
T |
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| Q |
800 |
ttttaaaagtgaaac |
814 |
Q |
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| T |
55003116 |
ttttaaaagtgaaac |
55003130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 493 - 584
Target Start/End: Original strand, 54989275 - 54989366
Alignment:
| Q |
493 |
gattctgaaaaggagccctttgtagcagcccataatattatcctgtcacatgcagctgcagttgatatctatagaaccaaataccaggtaat |
584 |
Q |
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| T |
54989275 |
gattccgagaaggatccctttgtagcagcccataatattatcctatcgcatgcagctgcagttgatatttatagaaacagataccaggtaat |
54989366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 54988967 - 54989024
Alignment:
| Q |
163 |
tcccacaagaactagaagacagatatggggggttgctaagtccccaatcacagtaagc |
220 |
Q |
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| T |
54988967 |
tccctcaagaacttgaggacagatatggaggttggctaagtccccaatcacagtaagc |
54989024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 405
Target Start/End: Original strand, 54989106 - 54989193
Alignment:
| Q |
318 |
cagggatgattttgcattttatgcggacctatgttttaaaacatttggtgatagagtaaagttctggatcacattcaacgaaccaaat |
405 |
Q |
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| T |
54989106 |
cagggaagattttgtattattcgcagacatatgttttaaatcctttggtgacagagttaagtactggaccacattcaatgaaccaaat |
54989193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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