View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-Insertion-17 (Length: 485)
Name: NF1594-Insertion-17
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-17 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 6 - 483
Target Start/End: Complemental strand, 8285166 - 8284689
Alignment:
| Q |
6 |
caagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctc |
105 |
Q |
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| T |
8285166 |
caagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctc |
8285067 |
T |
|
| Q |
106 |
ttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaaca |
205 |
Q |
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| T |
8285066 |
ttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaaca |
8284967 |
T |
|
| Q |
206 |
ttctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttcatgaaaccagataagtgattaaacctatgtggtggtgtcatgg |
305 |
Q |
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| T |
8284966 |
ttctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttcatgaaaccagataagtgattaaacctatgtggtggtgtcatgg |
8284867 |
T |
|
| Q |
306 |
cattaggcactacttcattaatatgattctccacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggtttcagtagggatgcgaaaataagc |
405 |
Q |
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| T |
8284866 |
cattaggcactacttcattaatatgattctgcacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggttccagtaggggtttgaaaataagc |
8284767 |
T |
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| Q |
406 |
atcaacttggttttggttcacggacaccgcgggtgaattagaaaacaccgccatcccatcattagcattagagtatcc |
483 |
Q |
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| T |
8284766 |
atcaacttggttttggttcaccgagactgcgggtgaattagaaaacaccaccatcccatcattagcattggagaatcc |
8284689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 34687250 - 34687150
Alignment:
| Q |
22 |
atcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttga |
121 |
Q |
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| T |
34687250 |
atcatcattacttgaagttgtcgtgacaccaaaattaaattgtgggtcttgttggtgcatgtgcatcatattcatcgcttcctcttgaatattctcttga |
34687151 |
T |
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| Q |
122 |
t |
122 |
Q |
| |
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| T |
34687150 |
t |
34687150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 34695176 - 34694979
Alignment:
| Q |
22 |
atcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttga |
121 |
Q |
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| T |
34695176 |
atcatcattacttgaagctgtcgtgacaccaaaattaagttgtgggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttga |
34695077 |
T |
|
| Q |
122 |
tcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaa |
219 |
Q |
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||| | ||| ||| |||||| |||||| |||| |||||||||||||| || | |||| ||||| |||||| | ||||||||| | ||||||||| |
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| T |
34695076 |
tcaaaaaggtcattgattgagcagattccatttttgtttccatagttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaa |
34694979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 266 - 469
Target Start/End: Complemental strand, 34694959 - 34694753
Alignment:
| Q |
266 |
aaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtg |
362 |
Q |
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| T |
34694959 |
aaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtg |
34694860 |
T |
|
| Q |
363 |
taggtagttgtaaatcggtttcagtagggatgcgaaaataagcatcaacttggttttggttcacggacaccgcgggtgaattagaaaacaccgccatccc |
462 |
Q |
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| T |
34694859 |
taggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcaccatccc |
34694760 |
T |
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| Q |
463 |
atcatta |
469 |
Q |
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||||||| |
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| T |
34694759 |
atcatta |
34694753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 298 - 386
Target Start/End: Complemental strand, 34687001 - 34686910
Alignment:
| Q |
298 |
tgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggtttcag |
386 |
Q |
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| T |
34687001 |
tgtcatgtcattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcag |
34686910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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