View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1594-Insertion-18 (Length: 469)
Name: NF1594-Insertion-18
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-18 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Complemental strand, 46680843 - 46680392
Alignment:
| Q |
8 |
ctaatgccgccaccatcaatgcttagtatagtcactaagtttccataggtaggaggctgaatctgtagaagtgatgattgtgttctctccatcaaatata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46680843 |
ctaatgccgccaccatcaatgcttagtatagttactaagttgccataggtaggaggctgaatctgtagaagtgatgattgtgttctctccatcaaatata |
46680744 |
T |
|
| Q |
108 |
tgtttgggaattaagttgaagtttggtcaggttattatgtggaatgccagagaattaaagctgaaagttt--atgaatattaatttgttgcagaaataga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46680743 |
tgtttgggaattaagttgaagtttggtcagg--------------------gaattaaagctgaaagtttttatgaatattaatttgttgcagaaataga |
46680664 |
T |
|
| Q |
206 |
aatatttatgaaagcaaggtagtaggatttagttggtttgttagatt-----gcattgtactataaaattgtatttataggagtttttagattgcattgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46680663 |
aatatttatgaaagcaaggtagtaggatttagttggtttgttagattagattgcattctactataaaattgtatttataggagtttttagattgcattgg |
46680564 |
T |
|
| Q |
301 |
agagtatggcatggatatatgatgttgactgtgtctcaaactttc---gtcaaagatgcgcgcatgccttcaatattatattatgtcgtctctgctatgg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46680563 |
agagtatggcatggatatatgatgttgactgtgtctcaaactgtctcagtcaaagatgcgcgcgtgccttcaatattatattatgtcgtctctgctatgg |
46680464 |
T |
|
| Q |
398 |
tccaaagactggttcagagttacttggttttggtattataaggcaaaccaaaagggatcaaaagtttaagag |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46680463 |
tccaaagactggttcagagttacttggttttggtattataaggcaaaccaaaagggatcaaaagtttcagag |
46680392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 46676861 - 46676737
Alignment:
| Q |
8 |
ctaatgccgccaccatcaatgcttagtatagtcactaagtttccataggtaggaggctgaatctgtagaagtgatgattgtgttctctccatcaaatata |
107 |
Q |
| |
|
||||| || ||||| || |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46676861 |
ctaataccaccaccgtcgatgcttagaatagtcactaagttcccataggtaggaggctgaatttgtagaagtgatgattgtgttctctccatcaaatata |
46676762 |
T |
|
| Q |
108 |
tgtttgggaattaagttgaagtttg |
132 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
46676761 |
tgtttgggaattaagttgaagtttg |
46676737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University