View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1594-Insertion-19 (Length: 350)

Name: NF1594-Insertion-19
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1594-Insertion-19
NF1594-Insertion-19
[»] chr3 (59 HSPs)
chr3 (5-344)||(6522944-6523283)
chr3 (41-344)||(6556176-6556479)
chr3 (28-344)||(6841035-6841351)
chr3 (5-350)||(6945500-6945848)
chr3 (5-346)||(7586103-7586444)
chr3 (25-344)||(6528475-6528794)
chr3 (75-350)||(8452937-8453212)
chr3 (22-265)||(6942185-6942428)
chr3 (64-344)||(6733964-6734245)
chr3 (64-344)||(6781418-6781699)
chr3 (129-350)||(8570407-8570628)
chr3 (11-349)||(6730179-6730517)
chr3 (104-349)||(6450251-6450496)
chr3 (129-347)||(8469916-8470134)
chr3 (104-349)||(6481439-6481684)
chr3 (205-344)||(6840627-6840769)
chr3 (233-344)||(6521864-6521975)
chr3 (205-344)||(6521999-6522138)
chr3 (233-344)||(6522269-6522380)
chr3 (233-344)||(6522809-6522920)
chr3 (205-344)||(6840900-6841039)
chr3 (236-350)||(6796067-6796181)
chr3 (205-344)||(6522134-6522273)
chr3 (233-344)||(6522539-6522650)
chr3 (205-350)||(6840348-6840496)
chr3 (233-344)||(6556041-6556152)
chr3 (180-342)||(6592810-6592972)
chr3 (172-344)||(6931994-6932166)
chr3 (205-344)||(6840765-6840904)
chr3 (205-321)||(6521617-6521733)
chr3 (205-344)||(6521729-6521868)
chr3 (233-344)||(6840492-6840603)
chr3 (236-350)||(8588275-8588389)
chr3 (205-342)||(6522406-6522543)
chr3 (205-342)||(6522676-6522813)
chr3 (236-321)||(6528363-6528448)
chr3 (216-321)||(6734396-6734501)
chr3 (216-321)||(6781162-6781267)
chr3 (111-262)||(6796293-6796444)
chr3 (180-342)||(6723536-6723698)
chr3 (129-342)||(6898447-6898660)
chr3 (218-342)||(6915549-6915673)
chr3 (129-338)||(6236084-6236293)
chr3 (129-342)||(6880875-6881088)
chr3 (180-342)||(7748412-7748574)
chr3 (274-350)||(4390366-4390442)
chr3 (191-342)||(6167318-6167469)
chr3 (129-342)||(6140645-6140858)
chr3 (237-342)||(13272010-13272115)
chr3 (180-316)||(5297155-5297291)
chr3 (275-350)||(5248682-5248757)
chr3 (247-337)||(6243794-6243884)
chr3 (270-344)||(6734315-6734389)
chr3 (270-344)||(6781274-6781348)
chr3 (237-321)||(6555929-6556013)
chr3 (236-347)||(5266545-5266656)
chr3 (218-328)||(6850749-6850859)
chr3 (299-344)||(6486457-6486502)
chr3 (270-342)||(6264182-6264254)
[»] scaffold1643 (1 HSPs)
scaffold1643 (22-350)||(419-750)
[»] scaffold0425 (3 HSPs)
scaffold0425 (22-344)||(9224-9546)
scaffold0425 (227-321)||(8977-9071)
scaffold0425 (241-344)||(9089-9192)
[»] scaffold0958 (1 HSPs)
scaffold0958 (132-346)||(1249-1462)
[»] chr7 (1 HSPs)
chr7 (250-342)||(6574786-6574878)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 59)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 344
Target Start/End: Complemental strand, 6523283 - 6522944
Alignment:
Q  5 acagtttacacagcctctaaaatccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctga 104  Q
    |||||||||||||||||| |||||||| | ||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||  |    
T  6523283 acagtttacacagcctctgaaatccaacttcaagtcttcaagaaagggaaaattgattaaattttggtccacggagaactccgtgttccgattttgccaa 6523184  T
Q  105 aggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatg 204  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  6523183 aggagtaactttttcaggctagtcggcaattcatttaccaaaattctatcacaactctgtatatctaactctatcatattatcacacttgggaattgatg 6523084  T
Q  205 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 304  Q
    |||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||    
T  6523083 cctccatcttgttgcaattactaatcttcagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctc 6522984  T
Q  305 tttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    |||||||||||||||| || |||| || ||| ||||||||    
T  6522983 tttaagcaaaggaaactctccaaggcataacaattcctcc 6522944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 41 - 344
Target Start/End: Complemental strand, 6556479 - 6556176
Alignment:
Q  41 ttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggcaattcattt 140  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  6556479 ttcaagaaagggaaaattgattaaattttggtgcacggagaactccgtgtaccgatttcgccgaaggagtaactttttcaggctagtcggcaattcattt 6556380  T
Q  141 accaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagttttt 240  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||||||   | |  ||||||||    
T  6556379 accaaaattctatcacaattctgtatatctaactctatcatattatcactcttgggaattgatgcctccaactcgttgcaatcaaatacacccagttttt 6556280  T
Q  241 gtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattc 340  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| || | ||||||||||||||||| || |||| || ||| ||||    
T  6556279 gtaaagaaggaaggtgttgaggcagagcccttttcaattcgagacaatttcttatagaaaacactttaagcaaaggaaactctccaaggcataacaattc 6556180  T
Q  341 ctcc 344  Q
    ||||    
T  6556179 ctcc 6556176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 28 - 344
Target Start/End: Complemental strand, 6841351 - 6841035
Alignment:
Q  28 ccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttcaggccag 126  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| || |  |||||||||| |||||| ||  |    
T  6841351 ccaattccaactcttcaagaaagggaaaattgattaaattttggtccacggagaactccgtgtattgattatcaca-aaggagtaaccttttcaagctgg 6841253  T
Q  127 tcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcact 226  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |     
T  6841252 tcggcaattcatttaccaaaattctatcacatctctgtatatctaactctatcatattatcactcttgggaattgatgcctccatcttgttgcaatccca 6841153  T
Q  227 aatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttca 326  Q
    ||| | ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| || ||    
T  6841152 aatctgcagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctcca 6841053  T
Q  327 agacacaaccattcctcc 344  Q
    || || ||| ||||||||    
T  6841052 aggcataacaattcctcc 6841035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 5 - 350
Target Start/End: Original strand, 6945500 - 6945848
Alignment:
Q  5 acagtttacacagcctctaaaatccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctg 103  Q
    |||||||||||||||||| ||||||||   |||||||||||||||| ||| |||||||| | ||||||||||||||||||| |||||| |||| || |      
T  6945500 acagtttacacagcctctgaaatccaacctcaacttttcaagaaagagaatattgattagattttggtccacggagaactcggtgtactgattatcaca- 6945598  T
Q  104 aaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggat 203  Q
    ||| | |||| ||||||     ||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||| ||||||||  |||    
T  6945599 aagtaataaccttttcaaatttgtcggcaattcatttaccaaaattctatcacatctctgtatatctaactctatcatattatcactcttgggaactgat 6945698  T
Q  204 gcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcaga---gcccttttcaatttgggacaatttcttatagtaa 300  Q
     |||||| ||  || ||| ||| ||  | || |||||||||| |||||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  6945699 acctccaactgtttacaaacacaaagttgcaatttttgtaaagaaggaaggtgttgaggcagcaaggcccttttcaatttgggacaatttcttatagtaa 6945798  T
Q  301 gctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattg 350  Q
    ||||||||||||||||||||| |||| |||| ||||||||||||||||||    
T  6945799 gctctttaagcaaaggaaacctttcaggacaaaaccattcctcccaattg 6945848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 5 - 346
Target Start/End: Original strand, 7586103 - 7586444
Alignment:
Q  5 acagtttacacagcctctaaaatccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctg 103  Q
    |||||||||||||||||| ||||| || | ||||  |||||||||| ||| |||||||| | ||||||||||||||||||| |||||| |||| || |      
T  7586103 acagtttacacagcctctgaaatcaaacttcaacacttcaagaaagagaatattgattagattttggtccacggagaactcggtgtactgattatcaca- 7586201  T
Q  104 aaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggat 203  Q
    ||||| |||  ||||||     ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||  ||    
T  7586202 aaggaataaacttttcaaatttgtcggcaattcatttaccaaaattctatcacatctctttatatctaactctatcatattatcacacttcggaattaat 7586301  T
Q  204 gcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagct 303  Q
    || |||| ||| ||||||||  |||| | |||||| |||||| ||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||    
T  7586302 gcttccaacttcttgcaatctttaatctccagtttctgtaaagaaggaaggtgttgaggcagagcccttttcaacttgggacatttttttatagaaagct 7586401  T
Q  304 ctttaagcaaaggaaacccttcaagacacaaccattcctccca 346  Q
    ||||||||||||||||||||||||||    |||||||||||||    
T  7586402 ctttaagcaaaggaaacccttcaagatgtgaccattcctccca 7586444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 25 - 344
Target Start/End: Complemental strand, 6528794 - 6528475
Alignment:
Q  25 aatccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttcaggc 123  Q
    |||||||  |||||| |||||||||||||||||| |||| | |||| | || ||| ||||| |||||| |||| || |  ||||| |||| ||||||  |    
T  6528794 aatccaaccccaactcttcaagaaagggaaaatttattacattttgctgcatggataactcggtgtactgattatcaca-aaggaataaccttttcaaac 6528696  T
Q  124 cagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatc 223  Q
      ||||| ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||    
T  6528695 tcgtcggaaattcatttaccaaaattctatcacatgtctgtatatctaactctatcatattatcacacttgggaattgttgcctccatcttgctgcaatc 6528596  T
Q  224 actaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaaccct 323  Q
    | |||| | ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||| || ||||||||||||||||||| ||    
T  6528595 aataatctccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaacttgttatagaaatctctttaagcaaaggaaactct 6528496  T
Q  324 tcaagacacaaccattcctcc 344  Q
     |||| || ||||||||||||    
T  6528495 ccaaggcataaccattcctcc 6528475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 75 - 350
Target Start/End: Original strand, 8452937 - 8453212
Alignment:
Q  75 acggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatctaact 174  Q
    |||||||||||||||||||| |||    ||| || ||||||||||| ||  ||||||||||||||||||||||||||||||||  ||||||||||||| |    
T  8452937 acggagaactccgtgtaccggttttcaagaatgaataactttttcaagctggtcggcaattcatttaccaaaattctatcacatctctttatatctaaat 8453036  T
Q  175 ctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagccctttt 274  Q
    |||| ||||||||||  |||||||| ||||| |||| | | ||||||||| ||||   || |||||||||| ||||||||||||||||||| | | ||||    
T  8453037 ctatgatattatcaccgttgggaattgatgcttccaacatcttgcaatcattaatgaacaatttttgtaaagaaggaaggtgttgaggcagggacatttt 8453136  T
Q  275 caatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattg 350  Q
    |||||||||||| | |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8453137 caatttgggacattctcttatataaagctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattg 8453212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 6942185 - 6942428
Alignment:
Q  22 taaaatccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcag 121  Q
    ||||||||||  |||||| ||| ||||||||||||||||||| | |||||| || ||||||||| |||||| ||||      ||||| |||  ||||||     
T  6942185 taaaatccaacaccaactcttcgagaaagggaaaattgattacattttggtgcaaggagaactcggtgtactgattataacaaaggaataaacttttcaa 6942284  T
Q  122 gccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaa 221  Q
    ||  ||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6942285 gctggtcggcaattcatttaccaaaattctatcacatctctgtatatctaactctatcatattatcacacttgggaattgatgcctccatcttgttgcaa 6942384  T
Q  222 tcactaatattcagtttttgtaaataaggaaggtgttgaggcag 265  Q
    | || ||| ||||||||||||||| |||||||||||||||||||    
T  6942385 taaccaatcttcagtttttgtaaagaaggaaggtgttgaggcag 6942428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 64 - 344
Target Start/End: Original strand, 6733964 - 6734245
Alignment:
Q  64 aagtttgg-tccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattct 162  Q
    |||||||| ||||| |||||||| |||||| |||||     ||||| |||||||||||  |  || |||||||||||||||||||||||||||||  ||     
T  6733964 aagtttggctccacagagaactcggtgtactgattttcagaaaggactaactttttcaaactggtaggcaattcatttaccaaaattctatcacatctcc 6734063  T
Q  163 ttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgagg 262  Q
     |||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||| ||||| | |||||| |||||| ||||||||||||| ||    
T  6734064 gtatatctaactctatcatattatcacacttaggaattgatgcttccaacttgttgcaatctctaatctccagtttctgtaaagaaggaaggtgttgtgg 6734163  T
Q  263 cagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    |||||||||||||||||  | ||| ||   ||||| ||  |||||||||||||||||| || |||| || ||||||||||||    
T  6734164 cagagcccttttcaattcagaacatttgaatatagaaatatctttaagcaaaggaaactctccaaggcataaccattcctcc 6734245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 64 - 344
Target Start/End: Complemental strand, 6781699 - 6781418
Alignment:
Q  64 aagtttgg-tccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattct 162  Q
    |||||||| ||||| |||||||| |||||| |||||     ||||| |||||||||||  |  || |||||||||||||||||||||||||||||  ||     
T  6781699 aagtttggctccacagagaactcggtgtactgattttcagaaaggactaactttttcaaactggtaggcaattcatttaccaaaattctatcacatctcc 6781600  T
Q  163 ttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgagg 262  Q
     |||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||| ||||| | |||||| |||||| ||||||||||||| ||    
T  6781599 gtatatctaactctatcatattatcacacttaggaattgatgcttccaacttgttgcaatctctaatctccagtttctgtaaagaaggaaggtgttgtgg 6781500  T
Q  263 cagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    |||||||||||||||||  | ||| ||   ||||| ||  |||||||||||||||||| || |||| || ||||||||||||    
T  6781499 cagagcccttttcaattcagaacatttgaatatagaaatatctttaagcaaaggaaactctccaaggcataaccattcctcc 6781418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 129 - 350
Target Start/End: Complemental strand, 8570628 - 8570407
Alignment:
Q  129 ggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaa 228  Q
    |||||||||||||||||||| |||||||| |  | || || |||||||   |||||||||  ||||||||| || ||||||| ||| ||||||||||| |    
T  8570628 ggcaattcatttaccaaaatgctatcacattcatctagatataactcttcgatattatcagccttgggaattgaagcctccaacttcttgcaatcactga 8570529  T
Q  229 tattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaag 328  Q
    | | ||||||||||||| ||||||||||| ||||||| |||||||||||| || |||||| |||||||| ||||| |||||||||||||||||||||||     
T  8570528 tctccagtttttgtaaagaaggaaggtgtcgaggcagggcccttttcaatctgtgacaatatcttatagaaagctttttaagcaaaggaaacccttcaat 8570429  T
Q  329 acacaaccattcctcccaattg 350  Q
    ||| ||||||||||||||||||    
T  8570428 acaaaaccattcctcccaattg 8570407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 6730517 - 6730179
Alignment:
Q  11 tacacagcctctaaaatccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagt 110  Q
    |||| ||||||||||||| || ||||||| |||||||  || |   ||||  |||||||| |||| ||||||||   |||||||| ||  |  ||||| |    
T  6730517 tacaaagcctctaaaatcaaactccaactcttcaagattggtattgttgagaaaagtttgctccaaggagaacttaatgtaccgactttcccaaaggact 6730418  T
Q  111 aactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctcca 210  Q
    |||||||||| || |||||||||||||||||||||||| || |||||   |  || || ||| ||||| |||||||||| ||||||||| ||||||||||    
T  6730417 aactttttcaagctagtcggcaattcatttaccaaaatgctttcacatcccactagatgtaaatctatgatattatcacccttgggaattgatgcctcca 6730318  T
Q  211 tcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaag 310  Q
     ||  ||||||  |  ||| |||| ||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||   ||||||||||||    
T  6730317 actctttgcaacaaacaatcttcaatttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaatttcttatttcaagctctttaag 6730218  T
Q  311 caaaggaaacccttcaagacacaaccattcctcccaatt 349  Q
     | ||||||| |||||| | | |||||||||||||||||    
T  6730217 tagaggaaactcttcaataaataaccattcctcccaatt 6730179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 104 - 349
Target Start/End: Complemental strand, 6450496 - 6450251
Alignment:
Q  104 aaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggat 203  Q
    ||||| ||||||||||| || |||||||||||||||||||||||| || ||| |   |  || || ||| ||||| |||||||||| ||||||||| |||    
T  6450496 aaggactaactttttcaagctagtcggcaattcatttaccaaaatgctttcatatcccactagatgtaaatctatgatattatcacccttgggaattgat 6450397  T
Q  204 gcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagct 303  Q
    ||||||| ||  ||||||  |  ||| |||| ||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||   |||||    
T  6450396 gcctccaactcattgcaacaaacaatcttcaatttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaatttcttatttcaagct 6450297  T
Q  304 ctttaagcaaaggaaacccttcaagacacaaccattcctcccaatt 349  Q
    ||||||| | ||||||| |||||| | | |||||||||||||||||    
T  6450296 ctttaagtagaggaaactcttcaataaataaccattcctcccaatt 6450251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 129 - 347
Target Start/End: Original strand, 8469916 - 8470134
Alignment:
Q  129 ggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaa 228  Q
    |||||||||||||  |||||   ||||||  ||| || |||||||||||| |||||||||| ||||||||| |||||||| | |   |  || ||| |||    
T  8469916 ggcaattcatttattaaaatgtgatcacatctctgtagatctaactctatgatattatcacccttgggaatcgatgcctctaacagttcacagtcaataa 8470015  T
Q  229 tattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaag 328  Q
    | |  | |||||||||| ||||||||||||||||||  || ||| |||||| ||||||  || |||||| ||||||||||||||||||||||||||||||    
T  8470016 tctctaatttttgtaaagaaggaaggtgttgaggcaatgcgcttctcaattcgggacagctttttatagaaagctctttaagcaaaggaaacccttcaag 8470115  T
Q  329 acacaaccattcctcccaa 347  Q
    |||||||||||||||||||    
T  8470116 acacaaccattcctcccaa 8470134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 104 - 349
Target Start/End: Complemental strand, 6481684 - 6481439
Alignment:
Q  104 aaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggat 203  Q
    ||||| ||||||||||| ||  ||||||||||| |||| |||||| || |||||   ||| | |  ||||||||  |||||||||| ||  || || ||     
T  6481684 aaggactaactttttcaagctggtcggcaattcctttatcaaaatgctgtcacatcccttcagacataactctaagatattatcaccctcaggcattgaa 6481585  T
Q  204 gcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagct 303  Q
    ||||||| ||||||||||| | ||||   || ||| |||||| |||||||||||||||| || |||||||||||||||||||||| | ||||||||||||    
T  6481584 gcctccaacttgttgcaattaataatcgacaatttctgtaaagaaggaaggtgttgaggaagggcccttttcaatttgggacaatcttttatagtaagct 6481485  T
Q  304 ctttaagcaaaggaaacccttcaagacacaaccattcctcccaatt 349  Q
    |||||||| |  ||||||||||| |||| |||||||||||| ||||    
T  6481484 ctttaagcgacagaaacccttcatgacataaccattcctccaaatt 6481439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 205 - 344
Target Start/End: Complemental strand, 6840769 - 6840627
Alignment:
Q  205 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcaga---gcccttttcaatttgggacaatttcttatagtaag 301  Q
    |||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||    |||||||| |||||||| ||||||||||||| ||     
T  6840769 cctccaacttgttgcaatcacaaatcttcagtttttgtaaagaaggaaggtgttgaggtagcaaggccctttttaatttggggcaatttcttatagaaat 6840670  T
Q  302 ctctttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||    
T  6840669 ctctttaagcaaaggaatcccttcaagacaaaaccatttctcc 6840627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 6521975 - 6521864
Alignment:
Q  233 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 332  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| || |||| ||     
T  6521975 cagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcat 6521876  T
Q  333 aaccattcctcc 344  Q
    ||| ||||||||    
T  6521875 aacaattcctcc 6521864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 344
Target Start/End: Complemental strand, 6522138 - 6521999
Alignment:
Q  205 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 304  Q
    |||||| |||||||||||  | ||| | ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| || |||    
T  6522138 cctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaatttcttatagaaatctc 6522039  T
Q  305 tttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    |||||||||||||||| || |||| || ||| ||||||||    
T  6522038 tttaagcaaaggaaactctccaaggcataacaattcctcc 6521999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 6522380 - 6522269
Alignment:
Q  233 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 332  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| || |||| ||     
T  6522380 cagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcat 6522281  T
Q  333 aaccattcctcc 344  Q
    ||| ||||||||    
T  6522280 aacaattcctcc 6522269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 6522920 - 6522809
Alignment:
Q  233 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 332  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| || |||| ||     
T  6522920 cagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcat 6522821  T
Q  333 aaccattcctcc 344  Q
    ||| ||||||||    
T  6522820 aacaattcctcc 6522809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 344
Target Start/End: Complemental strand, 6841039 - 6840900
Alignment:
Q  205 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 304  Q
    |||||| |||||||||||| | ||| |  || ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||    
T  6841039 cctccaacttgttgcaatcccaaatctctagattttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctc 6840940  T
Q  305 tttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    |||||||||||||||| || |||| || ||| ||||||||    
T  6840939 tttaagcaaaggaaactctccaaggcataacaattcctcc 6840900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 236 - 350
Target Start/End: Complemental strand, 6796181 - 6796067
Alignment:
Q  236 tttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaac 335  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||| | ||||| || |||||  ||||||||||||||||||||||||||||||||| |||    
T  6796181 tttttgtaaagaaggaaggttttgaggctgagcccttttcaattcgtgacaacttgttatataaagctctttaagcaaaggaaacccttcaagacaaaac 6796082  T
Q  336 cattcctcccaattg 350  Q
    |||||||||||||||    
T  6796081 cattcctcccaattg 6796067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 205 - 344
Target Start/End: Complemental strand, 6522273 - 6522134
Alignment:
Q  205 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 304  Q
    |||||| |||||||||||  | ||| | ||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| || |||    
T  6522273 cctccaacttgttgcaattccgaatctccagattttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaatttcttatagaaatctc 6522174  T
Q  305 tttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    |||||||||||||||| || |||| || ||| ||||||||    
T  6522173 tttaagcaaaggaaactctccaaggcataacaattcctcc 6522134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 6522650 - 6522539
Alignment:
Q  233 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 332  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||||| || |||| ||     
T  6522650 cagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttgttatagaaatctctttaagcaaaggaaactctccaaggcat 6522551  T
Q  333 aaccattcctcc 344  Q
    ||| ||||||||    
T  6522550 aacaattcctcc 6522539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 205 - 350
Target Start/End: Complemental strand, 6840496 - 6840348
Alignment:
Q  205 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcaga---gcccttttcaatttgggacaatttcttatagtaag 301  Q
    |||||| ||||||||||| |||||| | ||| ||||||||| ||| |||||||| ||||||    ||| |||||||||||||||| |||||||||| ||     
T  6840496 cctccaacttgttgcaataactaatctccagcttttgtaaagaagtaaggtgtttaggcagcactgcctttttcaatttgggacattttcttatagaaat 6840397  T
Q  302 ctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattg 350  Q
    || ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  6840396 ctttttaagcaaaggaaacccttcaagacaaaaccatttctcccaattg 6840348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 6556152 - 6556041
Alignment:
Q  233 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 332  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||   || ||||||||||||||||||| || |||| ||     
T  6556152 cagtttttgtaaagaaggaaggtgttgaggaagagcccttttcaattcgggacaatttcttattaaaaactctttaagcaaaggaaactctccaaggcat 6556053  T
Q  333 aaccattcctcc 344  Q
    || |||||||||    
T  6556052 aaacattcctcc 6556041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 342
Target Start/End: Complemental strand, 6592972 - 6592810
Alignment:
Q  180 atattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatt 279  Q
    |||||||||  ||||||||| || ||||||| ||  | ||||||| |||| | || |||||| ||| ||||||||||||||||||| || |||||||| |    
T  6592972 atattatcagccttgggaattgaagcctccaactcttggcaatcagtaatctccaatttttgcaaagaaggaaggtgttgaggcagggctcttttcaact 6592873  T
Q  280 tgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcct 342  Q
    ||||||||| | |||||  |||||||| ||||||||| || ||||||||||| ||||||||||    
T  6592872 tgggacaatgttttatacaaagctcttgaagcaaagggaaaccttcaagacataaccattcct 6592810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 344
Target Start/End: Original strand, 6931994 - 6932166
Alignment:
Q  172 actctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagccct 271  Q
    |||||||  |||||| | |||| ||||| || ||||| | ||||| |||||||||||| | ||||||||||||| |||||||||||||||| ||||||||    
T  6931994 actctatggtattatgaaacttaggaattgaagcctcaaacttgtggcaatcactaatctccagtttttgtaaagaaggaaggtgttgaggaagagccct 6932093  T
Q  272 tttcaatttgggacaatttcttatagt-aagctctttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    |||||||| | | ||   ||||  ||| ||||||| |||||||||||||||| |||||||| ||||||||||||    
T  6932094 tttcaattcgagccatcctctt-gagtaaagctctctaagcaaaggaaacccatcaagacataaccattcctcc 6932166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 205 - 344
Target Start/End: Complemental strand, 6840904 - 6840765
Alignment:
Q  205 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 304  Q
    |||||| |||||||||||| | ||| |  || ||||||||| ||||||||||||||||||||||||||||||||| ||||||||    ||||| || |||    
T  6840904 cctccaacttgttgcaatcccaaatctctagattttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatcggatatagaaatctc 6840805  T
Q  305 tttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    |||||||||||||||| || |||| || ||| ||||||||    
T  6840804 tttaagcaaaggaaactctccaaggcataacaattcctcc 6840765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 205 - 321
Target Start/End: Complemental strand, 6521733 - 6521617
Alignment:
Q  205 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 304  Q
    |||||| || |||||||||||| || |||| |||||||||| ||| ||||||||||||||| |  ||||||||||| ||||||||| |||||  ||||||    
T  6521733 cctccaactcgttgcaatcactgatcttcaatttttgtaaagaagaaaggtgttgaggcagggtgcttttcaatttaggacaattttttatataaagctc 6521634  T
Q  305 tttaagcaaaggaaacc 321  Q
    |||||||| ||||||||    
T  6521633 tttaagcagaggaaacc 6521617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 205 - 344
Target Start/End: Complemental strand, 6521868 - 6521729
Alignment:
Q  205 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 304  Q
    |||||| |||||||||||  | ||| | ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||     ||||| || |||    
T  6521868 cctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctc 6521769  T
Q  305 tttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    |||||||||||||||| || |||| || ||| ||||||||    
T  6521768 tttaagcaaaggaaactctccaaggcataacaattcctcc 6521729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 6840603 - 6840492
Alignment:
Q  233 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 332  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    ||||  || ||||||||||||||||||| || |||| ||     
T  6840603 cagtttttgtaaagaaggaaggtgttgtggcagagcccttttcaatttgggacaatcgaatatataaatctctttaagcaaaggaaactctccaaggcat 6840504  T
Q  333 aaccattcctcc 344  Q
    ||| ||||||||    
T  6840503 aacaattcctcc 6840492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 236 - 350
Target Start/End: Original strand, 8588275 - 8588389
Alignment:
Q  236 tttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaac 335  Q
    |||||||||| |||||||||||||||||| ||||||||||||||  ||||| |  ||||||   |||| |||||||||||||||||||| ||| || | |    
T  8588275 tttttgtaaagaaggaaggtgttgaggcaaagcccttttcaattcaggacattcacttataaatagctttttaagcaaaggaaacccttgaaggcatatc 8588374  T
Q  336 cattcctcccaattg 350  Q
    |||||||||||||||    
T  8588375 cattcctcccaattg 8588389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 205 - 342
Target Start/End: Complemental strand, 6522543 - 6522406
Alignment:
Q  205 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 304  Q
    |||||| |||||||||||  | ||| | ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||     ||||| || |||    
T  6522543 cctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctc 6522444  T
Q  305 tttaagcaaaggaaacccttcaagacacaaccattcct 342  Q
    |||||||||||||||| || |||| || ||| ||||||    
T  6522443 tttaagcaaaggaaactctccaaggcataacaattcct 6522406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 205 - 342
Target Start/End: Complemental strand, 6522813 - 6522676
Alignment:
Q  205 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 304  Q
    |||||| |||||||||||  | ||| | ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||     ||||| || |||    
T  6522813 cctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctc 6522714  T
Q  305 tttaagcaaaggaaacccttcaagacacaaccattcct 342  Q
    |||||||||||||||| || |||| || ||| ||||||    
T  6522713 tttaagcaaaggaaactctccaaggcataacaattcct 6522676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 236 - 321
Target Start/End: Complemental strand, 6528448 - 6528363
Alignment:
Q  236 tttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacc 321  Q
    |||||||||| ||||||| ||||||||||  |  ||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  6528448 tttttgtaaagaaggaagctgttgaggcaaggtgcttttcaatttaggacaatttcttatagaaagctctttaagcaaaggaaacc 6528363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 216 - 321
Target Start/End: Original strand, 6734396 - 6734501
Alignment:
Q  216 ttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaag 315  Q
    |||||| |||||||||||| |||||||||| ||||||| ||||||||||| |  | ||||| ||| ||||||||| |||||| ||||||| |||||||||    
T  6734396 ttgcaaccactaatattcaatttttgtaaagaaggaagatgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaag 6734495  T
Q  316 gaaacc 321  Q
    ||||||    
T  6734496 gaaacc 6734501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 6781267 - 6781162
Alignment:
Q  216 ttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaag 315  Q
    |||||| |||||||||||| |||||||||| ||||||| ||||||||||| |  | ||||| ||| ||||||||| |||||| ||||||| |||||||||    
T  6781267 ttgcaaccactaatattcaatttttgtaaagaaggaagatgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaag 6781168  T
Q  316 gaaacc 321  Q
    ||||||    
T  6781167 gaaacc 6781162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 111 - 262
Target Start/End: Complemental strand, 6796444 - 6796293
Alignment:
Q  111 aactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctcca 210  Q
    |||||||||| ||  || ||||||||||||||||||||| || ||||| ||| ||||| ||||| ||  ||| |||||| ||| ||||| ||||| ||||    
T  6796444 aactttttcaagcttgttggcaattcatttaccaaaattttaccacaactctgtatatataactgtacgatactatcaccctttggaattgatgcttcca 6796345  T
Q  211 tcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgagg 262  Q
     || || |||||||| ||| |||| ||| |||||| ||||||||||||||||    
T  6796344 actcgtagcaatcaccaatcttcattttctgtaaagaaggaaggtgttgagg 6796293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 342
Target Start/End: Complemental strand, 6723698 - 6723536
Alignment:
Q  180 atattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatt 279  Q
    |||||||||  ||||||||| || ||||||| ||  | ||||||| |||| | || |||||| ||  ||||||||||||||||||| |  |||||||| |    
T  6723698 atattatcagccttgggaattgaagcctccagctcttggcaatcaataatctccaatttttgcaatgaaggaaggtgttgaggcagggaacttttcaact 6723599  T
Q  280 tgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcct 342  Q
    ||||||||| | |||||  ||||||||  |||||||| || ||||||||||| ||||||||||    
T  6723598 tgggacaatgttttatacaaagctcttgtagcaaagggaaaccttcaagacataaccattcct 6723536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 342
Target Start/End: Original strand, 6898447 - 6898660
Alignment:
Q  129 ggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaa 228  Q
    ||||||||||||| |||||| | ||||||  ||||||  |||| |||  | |||||||||  ||||||||| || |||| || ||  | ||||||| |||    
T  6898447 ggcaattcatttatcaaaatgccatcacatctctttagttctagctcactgatattatcagccttgggaattgaagcctgcaactcttggcaatcaataa 6898546  T
Q  229 tattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaag 328  Q
    | ||||  ||||| ||| ||||||||||||||||||| |  |||||||| || ||||||| | | |||  |||||||| ||||||| |||| | ||||||    
T  6898547 ttttcaacttttgcaaagaaggaaggtgttgaggcagggaacttttcaacttcggacaatgtttgatacaaagctcttgaagcaaatgaaaacattcaag 6898646  T
Q  329 acacaaccattcct 342  Q
    ||| ||||||||||    
T  6898647 acataaccattcct 6898660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 218 - 342
Target Start/End: Original strand, 6915549 - 6915673
Alignment:
Q  218 gcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaagga 317  Q
    ||||||| |||| | || |||||| ||| ||||||||||||||||||| |  |||||||| |||||||||| | |||||  |||||||| |||||||||     
T  6915549 gcaatcaataatctccaatttttgcaaagaaggaaggtgttgaggcagggaacttttcaacttgggacaatgttttatacaaagctcttgaagcaaaggg 6915648  T
Q  318 aacccttcaagacacaaccattcct 342  Q
    || | ||||||||| ||||||||||    
T  6915649 aaacattcaagacataaccattcct 6915673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 338
Target Start/End: Original strand, 6236084 - 6236293
Alignment:
Q  129 ggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaa 228  Q
    ||||||||||||| |||||| | ||||||  ||||||  |||| |||  | |||||| ||  ||||||||| || ||||||| ||  | ||||||| |||    
T  6236084 ggcaattcatttatcaaaatgccatcacatctctttagttctagctcactgatattaccagccttgggaattgacgcctccaactcttggcaatcaataa 6236183  T
Q  229 tattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaag 328  Q
    | | || |||||| ||| ||||||||| |||||||||  | |||||||| |||||||||| | |||||  |||||||||||| ||||| || ||| || |    
T  6236184 tctccaatttttgcaaacaaggaaggtattgaggcaggtcacttttcaacttgggacaatgttttatacaaagctctttaagaaaagggaaacctccacg 6236283  T
Q  329 acacaaccat 338  Q
    ||| ||||||    
T  6236284 acataaccat 6236293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 342
Target Start/End: Original strand, 6880875 - 6881088
Alignment:
Q  129 ggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaa 228  Q
    ||||||||||||| ||||||   ||||||  ||||||  |||| |||  | |||||| ||  ||||||||| || ||| ||| ||  | ||||||| |||    
T  6880875 ggcaattcatttatcaaaatgtcatcacatctctttagttctagctcagtgatattagcagccttgggaattgaagccgccaactcttggcaatcaataa 6880974  T
Q  229 tattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaag 328  Q
    | | || |||||| ||| |||| ||||||||||| || || |||||||| |||||||||| | |||||  ||||| || ||||||||| || ||||||||    
T  6880975 tctccaatttttgcaaagaagggaggtgttgaggaagggcacttttcaacttgggacaatgttttatacaaagcttttgaagcaaagggaaaccttcaag 6881074  T
Q  329 acacaaccattcct 342  Q
    ||| ||||||||||    
T  6881075 acataaccattcct 6881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 342
Target Start/End: Original strand, 7748412 - 7748574
Alignment:
Q  180 atattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatt 279  Q
    |||||||||  ||||||||| || |||| || ||  | ||||||| |||| | || |||||| ||| ||||||||||||||||||| |  |||||||| |    
T  7748412 atattatcagccttgggaattgaagcctgcaactcttggcaatcaataatctccaatttttgcaaagaaggaaggtgttgaggcagggaacttttcaact 7748511  T
Q  280 tgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcct 342  Q
    | ||||||| | |||||  |||||||  ||||||||| || | ||||||||| ||||||||||    
T  7748512 tcggacaatgttttatacaaagctctcgaagcaaagggaaacattcaagacataaccattcct 7748574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 4390442 - 4390366
Alignment:
Q  274 tcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattg 350  Q
    ||||||| |||||||| | ||||| |||||||||||||||||| || ||||||| ||| |||||||||| |||||||    
T  4390442 tcaattttggacaattacgtatagaaagctctttaagcaaagggaaaccttcaacacataaccattccttccaattg 4390366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 342
Target Start/End: Original strand, 6167318 - 6167469
Alignment:
Q  191 cttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaattt 290  Q
    ||||||||| || ||||||| ||  | ||||||| |||| | ||  ||||| ||| ||||||| || ||||||||||| |||||||| |||||||| | |    
T  6167318 cttgggaattgaagcctccaactcttcgcaatcaataatttccaacttttgcaaacaaggaagatgatgaggcagagcacttttcaacttgggacattgt 6167417  T
Q  291 cttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcct 342  Q
     ||| |  |||||||| ||||||||| || |||||||| || ||||||||||    
T  6167418 tttagacaaagctcttgaagcaaagggaaaccttcaaggcataaccattcct 6167469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 342
Target Start/End: Original strand, 6140645 - 6140858
Alignment:
Q  129 ggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaa 228  Q
    ||||||||||||| |||||| | ||||||  ||||||  ||||  ||  | |||||| ||  ||||||||| || ||||||| ||  | ||||||| |||    
T  6140645 ggcaattcatttatcaaaatgccatcacatctctttagttctatatcactgatattagcagccttgggaattgaagcctccaactcttcgcaatcaataa 6140744  T
Q  229 tattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaag 328  Q
    | | ||  ||||| ||| ||||||| || |||||||| || |||||||| |||||||| | | ||| |  |||||||| ||||||||| || ||||||||    
T  6140745 tctccaacttttgcaaacaaggaagatgatgaggcagggcacttttcaacttgggacattgttttagacaaagctcttgaagcaaagggaaaccttcaag 6140844  T
Q  329 acacaaccattcct 342  Q
     || ||||||||||    
T  6140845 gcataaccattcct 6140858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 342
Target Start/End: Complemental strand, 13272115 - 13272010
Alignment:
Q  237 ttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaacc 336  Q
    ||||| ||| |||||| ||| ||||||||||| || ||||| ||||||||||   |||||  |||||||| |||||| || || ||||||||||| ||||    
T  13272115 ttttgcaaacaaggaacgtgctgaggcagagcactcttcaacttgggacaatgcgttatacaaagctcttgaagcaatgggaaaccttcaagacataacc 13272016  T
Q  337 attcct 342  Q
    ||||||    
T  13272015 attcct 13272010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 316
Target Start/End: Original strand, 5297155 - 5297291
Alignment:
Q  180 atattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatt 279  Q
    |||||||||  ||||||||| || ||||||| ||  | |||||||||||| |||| |||||| ||| ||||||| |||||||||||   ||||||||| |    
T  5297155 atattatcagccttgggaatcgaagcctccaactcttggcaatcactaatcttcaatttttgcaaagaaggaagatgttgaggcagtttccttttcaact 5297254  T
Q  280 tgggacaatttcttatagtaagctctttaagcaaagg 316  Q
    | || || | |||||| |  |||||||| ||||||||    
T  5297255 tagggcagtatcttattgacagctctttcagcaaagg 5297291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 5248682 - 5248757
Alignment:
Q  275 caatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattg 350  Q
    ||||||||||||||||||||||| ||||| |||||||||||| || |  |||| ||| ||||||| || |||||||    
T  5248682 caatttgggacaatttcttatagaaagctgtttaagcaaagggaaacactcaacacataaccatttcttccaattg 5248757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 337
Target Start/End: Original strand, 6243794 - 6243884
Alignment:
Q  247 aaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaacca 337  Q
    ||||||| |||||||||||   ||||||||| |||||||| | |||||| | ||||||||| |||||||| || ||||||| ||| |||||    
T  6243794 aaggaagatgttgaggcagtttccttttcaacttgggacagtatcttattgaaagctctttcagcaaagggaaaccttcaatacataacca 6243884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 6734315 - 6734389
Alignment:
Q  270 cttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    ||||| ||||||| |||||  ||||||  ||||||||||||  || |||||||||||||||| ||||||||||||    
T  6734315 cttttgaatttggaacaatgacttatataaagctctttaagagaaagaaacccttcaagacataaccattcctcc 6734389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 6781348 - 6781274
Alignment:
Q  270 cttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    ||||| ||||||| |||||  ||||||  ||||||||||||  || |||||||||||||||| ||||||||||||    
T  6781348 cttttgaatttggaacaatgacttatataaagctctttaagagaaagaaacccttcaagacataaccattcctcc 6781274  T

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Target: chr3; HSP #55
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 6556013 - 6555929
Alignment:
Q  237 ttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacc 321  Q
    ||||||||| | ||||| ||||||||||   | ||||||||||| |||||||||  ||||  |||||||||||||| ||||||||    
T  6556013 ttttgtaaagatggaagatgttgaggcaatactcttttcaatttaggacaattttctatataaagctctttaagcagaggaaacc 6555929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 347
Target Start/End: Original strand, 5266545 - 5266656
Alignment:
Q  236 tttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaac 335  Q
    |||||| ||| |||||||||||||||| |||    ||||||||||| ||||| ||  ||||  |||||||| ||||||||| || | ||||| ||| |||    
T  5266545 tttttgcaaagaaggaaggtgttgaggtagatattttttcaatttgtgacaactttctataaaaagctcttcaagcaaagggaaactttcaacacataac 5266644  T
Q  336 cattcctcccaa 347  Q
    ||||||| ||||    
T  5266645 cattccttccaa 5266656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 6850859 - 6850749
Alignment:
Q  218 gcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaagga 317  Q
    ||||||| |||| | || ||||||  || |||| |||||||||||||| || |||||||| || ||||||| | |||||  |||||||| ||| |||||     
T  6850859 gcaatcaataatctccaatttttgctaagaagggaggtgttgaggcagggcacttttcaacttcggacaatgttttatacaaagctcttgaagtaaaggg 6850760  T
Q  318 aacccttcaag 328  Q
    || ||||||||    
T  6850759 aaaccttcaag 6850749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 6486502 - 6486457
Alignment:
Q  299 aagctctttaagcaaaggaaacccttcaagacacaaccattcctcc 344  Q
    ||||||||| |||||||||||||| |||||||| ||||| ||||||    
T  6486502 aagctctttcagcaaaggaaacccatcaagacataaccagtcctcc 6486457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 6264182 - 6264254
Alignment:
Q  270 cttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcct 342  Q
    |||||||||||||||||||   ||| || |||||||||||  ||||| || || |||||||| ||||||||||    
T  6264182 cttttcaatttgggacaatgatttagagaaagctctttaactaaagggaaaccatcaagacataaccattcct 6264254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 350
Target Start/End: Original strand, 419 - 750
Alignment:
Q  22 taaaatccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttca 120  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| |||||| |  ||||||||| |||||| |||| || |  ||||| |||| ||||||    
T  419 taaaatccaattgcaactcttcaagaaagggaaaattgattaaattttggtgcggggagaactcggtgtactgattatcaca-aaggaataaccttttca 517  T
Q  121 ggccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgca 220  Q
     ||  |||| |||||||||||||||||||||||||||  || ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  518 agctggtcgacaattcatttaccaaaattctatcacatctccttatatctaactctatcatattatcactcttgggaattgatgcctccatcttgttgca 617  T
Q  221 atcactaatattcagtttttgtaaataaggaaggtgttgaggcaga---gcccttttcaatttgggacaatttcttatagtaagctctttaagcaaagga 317  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||   |||||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  618 atcagtaatattcagtttttgtaaaaaaggaaggtgttgaggcagagtggccctttctaatttgggacactttcttatagtaagctctttaagcaaagga 717  T
Q  318 aacccttcaagacacaaccattcctcccaattg 350  Q
    ||||||||| |||||||||||||||||||||||    
T  718 aacccttcaggacacaaccattcctcccaattg 750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 171; Significance: 9e-92; HSPs: 3)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 22 - 344
Target Start/End: Complemental strand, 9546 - 9224
Alignment:
Q  22 taaaatccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcag 121  Q
    |||||||||||| ||||  ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| ||  |||||||||  ||||||     
T  9546 taaaatccaattgcaacgattcaagaaagggaaaattgattaaattttggtccacagagaactcagtgtaccgattttgccaaaggagtaaacttttcaa 9447  T
Q  122 gccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaa 221  Q
    ||  ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  9446 gctggtcggcaattcatttaccaaaattctatcacaactttgtatatctaactctatcatattatcacacttgggaattgatgcttccaacttgttgcaa 9347  T
Q  222 tcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacc 321  Q
    ||| ||||   || |||||||||| ||||||||||||| ||||||||||||||||||| |||||||||   ||||| || ||| |||||||||||||||     
T  9346 tcattaatgaacaatttttgtaaagaaggaaggtgttgtggcagagcccttttcaattcgggacaattggatatagaaaactcgttaagcaaaggaaact 9247  T
Q  322 cttcaagacacaaccattcctcc 344  Q
    || |||| || ||||||||||||    
T  9246 ctccaaggcataaccattcctcc 9224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 9071 - 8977
Alignment:
Q  227 aatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacc 321  Q
    |||| ||| |||||||||| ||||||| ||||||||||| |  ||||||||||| |||||||||  ||||  |||||||||||||| ||||||||    
T  9071 aataatcaatttttgtaaagaaggaagatgttgaggcagggtgcttttcaatttaggacaattttctatataaagctctttaagcagaggaaacc 8977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 344
Target Start/End: Complemental strand, 9192 - 9089
Alignment:
Q  241 gtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattc 340  Q
    ||||| ||||||| ||||||||||   ||||||| ||||| | |||||  | ||||| ||||||||||||  || |||||||||||||||| ||||||||    
T  9192 gtaaagaaggaagatgttgaggcaatacccttttgaatttagaacaataccatatagaaagctctttaagagaaagaaacccttcaagacataaccattc 9093  T
Q  341 ctcc 344  Q
    ||||    
T  9092 ctcc 9089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 346
Target Start/End: Complemental strand, 1462 - 1249
Alignment:
Q  132 aattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaatat 231  Q
    ||||||||||||||||| ||||||||    ||||  |||| |||| | |||||||||  ||| ||||| ||  |||||| ||||  ||| || |||||||    
T  1462 aattcatttaccaaaatgctatcacatccgtttag-tctagctctctgatattatcagccttaggaattgaaacctccaacttgcagcactcgctaatat 1364  T
Q  232 tcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagaca 331  Q
     || | |||||||| ||||||||||| |||| || |||||||||||| || |||||| |||||||| ||| | |||||||||||||||||||||||||||    
T  1363 ccaatatttgtaaagaaggaaggtgtcgaggtagggcccttttcaatatgcgacaatatcttatagaaagatttttaagcaaaggaaacccttcaagaca 1264  T
Q  332 caaccattcctccca 346  Q
      ||||||| |||||    
T  1263 ataccattcttccca 1249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 342
Target Start/End: Complemental strand, 6574878 - 6574786
Alignment:
Q  250 gaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcct 342  Q
    |||||| |||||||||   ||||||||||||||||||||    ||||  ||||||||| ||||| ||||||| ||||||  | ||||||||||    
T  6574878 gaaggttttgaggcaggaaccttttcaatttgggacaatggtctatataaagctctttgagcaagggaaaccgttcaagttaaaaccattcct 6574786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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