View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-Insertion-20 (Length: 281)
Name: NF1594-Insertion-20
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-20 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 39457408 - 39457681
Alignment:
| Q |
8 |
cataccactctttctacacgtaggatctctgccttacaaaccatactaaatggaatatgtaattcacaaatcctagccttgatcaaactgggtaaggcta |
107 |
Q |
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| T |
39457408 |
cataccactctttctacacgtaggatctctgccttacaaaccatactaaatggaatatgtaattcacaaatcctagccttgatcaaactgggtaaggcta |
39457507 |
T |
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| Q |
108 |
taaagaccgctgataaacggcttaaaaaattggccacaaagcaactttttgttgtttccaaatccgctagaacaggacatcctaatagaagattctttag |
207 |
Q |
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| T |
39457508 |
taaagtccgctgataaacggcttaaaaaattggccacaaagcaactttttgttgtttccaaatcctctagaacaggacatcctaatagaagattctttag |
39457607 |
T |
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| Q |
208 |
atgctcataacatttaaaatcaatcttatgcaaatggagagttttaagactaggtaaatatatatccacttgag |
281 |
Q |
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| T |
39457608 |
atgctcataacatttaaaatcaatcttatgcaaatggagagttttaagactaggtaaatatatatccacttgag |
39457681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 39437864 - 39437590
Alignment:
| Q |
7 |
acataccactctttctacacgtaggatctctgccttacaaaccatactaaatggaatatgtaattcacaaatcctagccttgatcaaactgggtaaggct |
106 |
Q |
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| T |
39437864 |
acataccactttttctatacgtaagttctctgctttacaaaccatactaagtggaacaaagaattcactaatccttgccttgattatattaggtaaggtt |
39437765 |
T |
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| Q |
107 |
ataaagaccgctgataaacggcttaaaaaattggccacaaagcaactttttgttgtttccaaatccgctagaacaggacatcctaatagaagattcttta |
206 |
Q |
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| T |
39437764 |
ataaagtccaccaaaaaacggttactcagaccgaacataaagcaacttttagttgtttccaaatcctctagaataggacagcttaataaaagcttcatca |
39437665 |
T |
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| Q |
207 |
gatgctcataacatttaaaatcaatcttatgcaaatggagagttttaagactaggtaaatatatatccacttgag |
281 |
Q |
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| T |
39437664 |
gttgttcatgagatccaaaatcaaccttatgcaaatggagagtttgaagactaggtaaatataaatccacttgag |
39437590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 39424687 - 39424567
Alignment:
| Q |
161 |
gtttccaaatccgctagaacaggacatcctaatagaagattctttagatgctcataacatttaaaatcaatcttatgcaaatggagagttttaagactag |
260 |
Q |
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| T |
39424687 |
gtttccaaatcctctagaataggacaacttaataaaatcttcattagatgctcatgacattcaaaatcaaccctattcaaatggagagttttaagactag |
39424588 |
T |
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| Q |
261 |
gtaaatatatatccacttgag |
281 |
Q |
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| T |
39424587 |
gtaaatgtaaatccacttgag |
39424567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 281
Target Start/End: Original strand, 39463078 - 39463200
Alignment:
| Q |
159 |
ttgtttccaaatccgctagaacaggacatcctaatagaagattctttagatgctcataacatttaaaatcaatcttatgcaaatggagagttttaagact |
258 |
Q |
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|||||||||||||| ||| || |||||| | ||||| ||| ||| |||||||||||| |||| ||| |||| | ||| |||||||||| ||||| |||| |
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| T |
39463078 |
ttgtttccaaatcctctaaaataggacagcttaataaaagcttcattagatgctcatgacatccaaactcaaccctattcaaatggagaattttaggact |
39463177 |
T |
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| Q |
259 |
aggtaaatatatatccacttgag |
281 |
Q |
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| T |
39463178 |
aggtaaatataaatccacttgag |
39463200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 39424808 - 39424739
Alignment:
| Q |
37 |
tgccttacaaaccatactaaatggaatatgtaattcacaaatcctagccttgatcaaactgggtaaggct |
106 |
Q |
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|||||||||||||||||||| |||||||| |||||| |||||| |||||||||||| |||| |||||| |
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| T |
39424808 |
tgccttacaaaccatactaagtggaatatagaattcagtaatccttgccttgatcaaattgggaaaggct |
39424739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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