View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-Insertion-21 (Length: 278)
Name: NF1594-Insertion-21
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-21 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 43110806 - 43110988
Alignment:
| Q |
8 |
aaatcttcgaacatataaaaatcttaccatgagattgttccatggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacc |
107 |
Q |
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| T |
43110806 |
aaatcttcgaacatataaaaatcttaccatgagattgttccatggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacc |
43110905 |
T |
|
| Q |
108 |
cagttatcactgtcacattcaactatggttttgtcaaagtcaaaaaccacaacaatattagccataatagtgcaaagagaatg |
190 |
Q |
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| T |
43110906 |
cagttatcactgtcacattcaactatggttttgtcaaagtcaaaaaccacaacaatattagccataatagtgcaaagagaatg |
43110988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 26315720 - 26315866
Alignment:
| Q |
30 |
cttaccatgagattgttccatggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaa |
129 |
Q |
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| T |
26315720 |
cttaccatgagatagttcaatggcatggtgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcaa |
26315819 |
T |
|
| Q |
130 |
ctatggttttgtcaaagtcaaaaaccacaacaatattagccataata |
176 |
Q |
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| T |
26315820 |
taatggttttgtcaaagtcgaaaaccactacaatactagccataata |
26315866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 43111006 - 43111070
Alignment:
| Q |
214 |
aagaaagaacaaattcccaagaatttgattccaactgggtatttgaaactgctctcaaaattgta |
278 |
Q |
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| T |
43111006 |
aagaaagaacaaattcccaagaatttgattccaactgggtatttgaaactgctctcaaaattgta |
43111070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 43105414 - 43105495
Alignment:
| Q |
81 |
tcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaactatggttttgtcaaagtcaaaaaccacaacaa |
162 |
Q |
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| T |
43105414 |
tcagttaaaccaaactcatcaagaacccaattatcactatcacattcaatgattgttgagtcaaagtcaaaaatcactacaa |
43105495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 5249791 - 5249656
Alignment:
| Q |
32 |
taccatgagattgttccatggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaact |
131 |
Q |
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|||||||||| ||||| ||||| ||||||| || | |||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| | |
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| T |
5249791 |
taccatgagagaattccaaggcatagtgggaaggagctgattgaacaaatcagtgaaacccaattcatcaataacccaattatcactgtcacaatcaatt |
5249692 |
T |
|
| Q |
132 |
atggttttgtcaaagtcaaaaaccacaacaatatta |
167 |
Q |
| |
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| T |
5249691 |
atggttttatcaaaatcaaaaactacaacaatatta |
5249656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 5269007 - 5268891
Alignment:
| Q |
51 |
ggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaactatggttttgtcaaagtcaa |
150 |
Q |
| |
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||||| ||||||| |||| |||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| |||| ||||||||| || ||||| | |
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| T |
5269007 |
ggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaacaacccaattatcactatcacaatcaattatggttttatcgaagtcga |
5268908 |
T |
|
| Q |
151 |
aaaccacaacaatatta |
167 |
Q |
| |
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|||| | ||||||||| |
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| T |
5268907 |
aaactatcacaatatta |
5268891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 5272770 - 5272892
Alignment:
| Q |
45 |
ttccatggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaactatggttttgtcaa |
144 |
Q |
| |
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||||| ||||| ||||||| || | |||||||||||| ||||||||||||||||||| | ||| |||||||| ||||| |||| ||||||||||||| |
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| T |
5272770 |
ttccaaggcattgtgggaaggagctgattgaacaaatcggtgaaacccaattcatcaatcaaccaattatcactatcacaatcaatgatggttttgtcaa |
5272869 |
T |
|
| Q |
145 |
agtcaaaaaccacaacaatatta |
167 |
Q |
| |
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||||||||| | |||||||||| |
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| T |
5272870 |
agtcaaaaataataacaatatta |
5272892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 5276741 - 5276859
Alignment:
| Q |
45 |
ttccatggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaactatggttttgtcaa |
144 |
Q |
| |
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||||| ||||| || |||| |||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||| || |||||||||| |
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| T |
5276741 |
ttccaaggcattgtaggaaggagttgattgaacaaatcagtgaaacccaattcatcaatcaaccaattatcactgtcacaatcaatgatcgttttgtcaa |
5276840 |
T |
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| Q |
145 |
agtcaaaaaccacaacaat |
163 |
Q |
| |
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| |||||||| | |||||| |
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| T |
5276841 |
aatcaaaaacaataacaat |
5276859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 19569226 - 19569148
Alignment:
| Q |
66 |
agttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaactatggttttgtcaa |
144 |
Q |
| |
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|||| |||||||||||| ||||||| |||||||||||| |||| |||||||| ||||| |||| || |||||| |||| |
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| T |
19569226 |
agttgattgaacaaatcgatgaaacctaattcatcaacatcccaattatcactatcacaatcaattaaggttttatcaa |
19569148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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