View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-Insertion-22 (Length: 293)
Name: NF1594-Insertion-22
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-22 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 128 - 293
Target Start/End: Complemental strand, 15896843 - 15896678
Alignment:
| Q |
128 |
tataatttataaaagagattagagggaagggaatcccacaggttggtcatcaaggaacacagaaaaataagcatgattaattcttagttaaaaatagatc |
227 |
Q |
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| T |
15896843 |
tataatttatagaagagattagagggaagggaatcccacaggttggtcatcaaggaacacagaaaaataagcatgattaattcttagttaaaaataaatc |
15896744 |
T |
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| Q |
228 |
aaagaggtaaagaaaaagtttattaaatccaattcagctcccacattcagtgaatcagattcggag |
293 |
Q |
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| T |
15896743 |
aaagaggtaaagaaaaagtttattaaatccaattcagctcccacattcagtgaatcagattcggag |
15896678 |
T |
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Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 15897091 - 15896971
Alignment:
| Q |
8 |
atgcaagccacgtgtcctttgtacttcctagacttgatcttttcttataggagatataacatgacacatatctcacaatttagagccacctaaaaactca |
107 |
Q |
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| T |
15897091 |
atgcaagccacgtgtcctttgtacttcttagacttgatcttttcttataggagatata-catgacacatatctcacaatttagagccacctaaaaactca |
15896993 |
T |
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| Q |
108 |
tttttgatacaattgttaatta |
129 |
Q |
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| T |
15896992 |
tttttgatacaattgttaatta |
15896971 |
T |
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