View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-Insertion-24 (Length: 159)
Name: NF1594-Insertion-24
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-24 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 8e-81; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 8e-81
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 28073925 - 28073774
Alignment:
| Q |
8 |
attattgctacttcttttgaggcatgttatcattatattaagtatagttatacctttgctttcagaagactgttcaagataccatcttagaagttcttca |
107 |
Q |
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| T |
28073925 |
attattgctacttcttttgaggcatgttatcattatattaagtatagttatacctttgctttcagaagactgttcaagataccatcttagaagttcttca |
28073826 |
T |
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| Q |
108 |
ccacaagcatccccttctgataacataaccgaacttccatcttctccgacgc |
159 |
Q |
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| T |
28073825 |
ccacaagcatccccttctgataacataaccgaacttccatcttctccgacgc |
28073774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 28090842 - 28090700
Alignment:
| Q |
17 |
acttcttttgaggcatgttatcattatattaagtatagttatacctttgctttcagaagactgttcaagataccatcttagaagttcttcaccacaagca |
116 |
Q |
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| T |
28090842 |
acttctttggaggcatgttatcattatatcaagtatagttgtacctttgctttcagaagactgttcaagataccatcttagaagttcttcaccacaagca |
28090743 |
T |
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| Q |
117 |
tccccttctgataacataaccgaacttccatcttctccgacgc |
159 |
Q |
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| T |
28090742 |
tccccttctgataacggaaccggaattccatcctctccgacgc |
28090700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 28001262 - 28001114
Alignment:
| Q |
8 |
attattgctacttcttttgaggcatgttatcattatattaagtatagttatacctttgctttcagaagactgttcaagataccatcttagaagttcttca |
107 |
Q |
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| T |
28001262 |
attattactacttcttttgaggcatgttatcattatatcaaatatagctatacctttgcttttagaagatcgttcaagataccatcgtagaagctcttca |
28001163 |
T |
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| Q |
108 |
ccacaagcatccccttctgataacataaccgaacttccatcttctccga |
156 |
Q |
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| T |
28001162 |
ccacaagcatccccttcagttaacgtaaccggaattccatcttctccga |
28001114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 28034590 - 28034465
Alignment:
| Q |
13 |
tgctacttcttttgaggcatgttatcattatattaagtatagttatacctttgctttcagaagactgttcaagataccatcttagaagttcttcaccaca |
112 |
Q |
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| T |
28034590 |
tgctacttcttttgaggcatgttatcgttatatcaagtatagttgtacctttacttttagcagactgttcaagataccatgttagaagctcttcaccaga |
28034491 |
T |
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| Q |
113 |
agcatccccttctgataacataaccg |
138 |
Q |
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| T |
28034490 |
agcatccccttccgataacagaaccg |
28034465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 27916239 - 27916118
Alignment:
| Q |
8 |
attattgctacttcttttgaggcatgttatcattatattaagtatagttatacctttgctttcagaagactgttcaagataccatcttagaagttcttca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||||||||| |||||| ||| | ||||||| |||||| |
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| T |
27916239 |
attattgctacttcttttgaggcatgttatcattatatcaagtatacttgtaccttttctttcagaagactgctcaagaaaccgtattagaagctcttca |
27916140 |
T |
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| Q |
108 |
ccacaagcatccccttctgata |
129 |
Q |
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| T |
27916139 |
ccacaaacatccccttcagata |
27916118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 28016768 - 28016662
Alignment:
| Q |
50 |
tatagttatacctttgctttcagaagactgttcaagataccatcttagaagttcttcaccacaagcatccccttctgataacataaccgaacttccatct |
149 |
Q |
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| T |
28016768 |
tatagttgtacctttgctttcagaagaccgttcaagataccatattagaagctcctcaccaaaagcatccccttcggataacaaaaccggaattccatct |
28016669 |
T |
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| Q |
150 |
tctccga |
156 |
Q |
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| T |
28016668 |
tttccga |
28016662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 28533314 - 28533239
Alignment:
| Q |
55 |
ttatacctttgctttcagaagactgttcaagataccatcttagaagttcttcaccacaagcatccccttctgataa |
130 |
Q |
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| T |
28533314 |
ttatacctttgcttactgaagattgttcaagataccatgtaagaagttcttcaccacaagcatctccttcagataa |
28533239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 2e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 1439500 - 1439379
Alignment:
| Q |
35 |
tatcattatattaagtatagttatacctttgctttcagaagactgttcaagataccatcttagaagttcttcaccacaagcatccccttctgataacata |
134 |
Q |
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| T |
1439500 |
tatcattatatcaagtatagttgtacctttgctttcaacagactgttcaagataccatcttagaagttcttcaccacaagcatccccttctgataatgga |
1439401 |
T |
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| Q |
135 |
accgaacttccatcttctccga |
156 |
Q |
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| T |
1439400 |
accggaattccatcttctccga |
1439379 |
T |
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