View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1594-Insertion-25 (Length: 123)

Name: NF1594-Insertion-25
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1594-Insertion-25
NF1594-Insertion-25
[»] chr1 (16 HSPs)
chr1 (8-123)||(4322305-4322420)
chr1 (9-116)||(4334200-4334307)
chr1 (9-81)||(3379477-3379549)
chr1 (13-71)||(2012706-2012764)
chr1 (13-71)||(2007223-2007281)
chr1 (13-71)||(2011209-2011267)
chr1 (13-63)||(3342004-3342054)
chr1 (9-63)||(3362466-3362520)
chr1 (17-71)||(2020466-2020520)
chr1 (9-80)||(3193366-3193437)
chr1 (9-80)||(3202184-3202255)
chr1 (9-80)||(3211021-3211092)
chr1 (15-63)||(3373460-3373508)
chr1 (9-80)||(3217821-3217892)
chr1 (38-81)||(6601057-6601100)
chr1 (11-63)||(1793451-1793503)
[»] chr2 (3 HSPs)
chr2 (9-99)||(20953718-20953808)
chr2 (9-97)||(20924179-20924267)
chr2 (10-100)||(20935181-20935271)
[»] chr4 (1 HSPs)
chr4 (8-72)||(21238228-21238292)
[»] chr5 (1 HSPs)
chr5 (9-79)||(17970515-17970585)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 1e-58; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-58
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 4322420 - 4322305
Alignment:
Q  8 ctgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttctttctttaagcstaaacttcgataacatgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4322420 ctgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttctttctttaagcgtaaacttcgataacatgg 4322321  T
Q  108 cggaaattttgactgc 123  Q
    ||||||||||||||||    
T  4322320 cggaaattttgactgc 4322305  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-43
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 4334307 - 4334200
Alignment:
Q  9 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttctttctttaagcstaaacttcgataacatggc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||     
T  4334307 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattaatctaagttttctttccttaaccataaacttcgataacatgga 4334208  T
Q  109 ggaaattt 116  Q
    ||||||||    
T  4334207 ggaaattt 4334200  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 3379477 - 3379549
Alignment:
Q  9 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttctttc 81  Q
    |||||||||||||||||||||||| | |  ||||||||||||||||||||||||| |||||||||| ||||||    
T  3379477 tgcttcagtatttggctgcaggtgatgtatcagtaaagcttcctacaccttgtatcgatctaagttatctttc 3379549  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 2012706 - 2012764
Alignment:
Q  13 tcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaa 71  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  2012706 tcagtatttagctgcaggtgttgtgccagtaaagcttcctacaccttgtattaatctaa 2012764  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 2007223 - 2007281
Alignment:
Q  13 tcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaa 71  Q
    |||||||||||||||||||| | | ||||||||||||||||||||||||||| ||||||    
T  2007223 tcagtatttggctgcaggtgctgttccagtaaagcttcctacaccttgtattaatctaa 2007281  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 2011209 - 2011267
Alignment:
Q  13 tcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaa 71  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||||||||| ||||||    
T  2011209 tcagtatttagctgcaggtgttgtgccactaaagcttcctacaccttgtattaatctaa 2011267  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 3342004 - 3342054
Alignment:
Q  13 tcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtat 63  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  3342004 tcagtatttggctgcaggtattgtgccagtaaagcttcctacaccttgtat 3342054  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 3362466 - 3362520
Alignment:
Q  9 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtat 63  Q
    |||||||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  3362466 tgcttcagtatttggctgcaggtgttgtgccaataaagcttcccacaccttgtat 3362520  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 2020466 - 2020520
Alignment:
Q  17 tatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaa 71  Q
    ||||| |||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  2020466 tatttagctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaa 2020520  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 3193437 - 3193366
Alignment:
Q  9 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttcttt 80  Q
    ||||| ||||||||| |||||||| | |||| ||||||||||| |||| ||||||  |||||||||||||||    
T  3193437 tgcttaagtatttggatgcaggtgatgtgcccgtaaagcttccgacacgttgtatcaatctaagttttcttt 3193366  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 3202255 - 3202184
Alignment:
Q  9 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttcttt 80  Q
    ||||| ||||||||| |||||||| | |||| ||||||||||| |||| ||||||  |||||||||||||||    
T  3202255 tgcttaagtatttggatgcaggtgatgtgcccgtaaagcttccgacacgttgtatcaatctaagttttcttt 3202184  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 3211092 - 3211021
Alignment:
Q  9 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttcttt 80  Q
    ||||| ||||||||| |||||||| | |||| ||||||||||| |||| ||||||  |||||||||||||||    
T  3211092 tgcttaagtatttggatgcaggtgatgtgcccgtaaagcttccgacacgttgtatcaatctaagttttcttt 3211021  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 3373460 - 3373508
Alignment:
Q  15 agtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtat 63  Q
    ||||||||||||||| || | ||||||||||||||||| ||||||||||    
T  3373460 agtatttggctgcagatgatgtgccagtaaagcttcctgcaccttgtat 3373508  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 3217892 - 3217821
Alignment:
Q  9 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttcttt 80  Q
    ||||||||||||||| |||||||| | |||| ||||| ||||| |||||||||||  || |||||| |||||    
T  3217892 tgcttcagtatttggatgcaggtgatgtgccggtaaaacttccgacaccttgtatcaatttaagttctcttt 3217821  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 6601100 - 6601057
Alignment:
Q  38 ccagtaaagcttcctacaccttgtattgatctaagttttctttc 81  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||||    
T  6601100 ccagtaaagcttcctaccccttgcattgatctaagttatctttc 6601057  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 1793451 - 1793503
Alignment:
Q  11 cttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtat 63  Q
    |||||||||||  ||||||||||| |||||  || ||||||||||||||||||    
T  1793451 cttcagtatttatctgcaggtgttgtgccaacaatgcttcctacaccttgtat 1793503  T

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Target: chr2 (Bit Score: 67; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-30
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 20953718 - 20953808
Alignment:
Q  9 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttctttctttaagcstaaacttcga 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| ||| || ||||||||||    
T  20953718 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtatttatctaagctatctttccttatgcataaacttcga 20953808  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-21
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 20924179 - 20924267
Alignment:
Q  9 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttctttctttaagcstaaacttc 97  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||| ||||||  ||||||||  || || ||||||||    
T  20924179 tgcttcagtatttggctgcaggtgtggtgccagtaaagcttcctacactttgtattaatctaacatttctttccatatgcctaaacttc 20924267  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 8e-21
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 20935181 - 20935271
Alignment:
Q  10 gcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttctttctttaagcstaaacttcgat 100  Q
    |||||||||| || |||||||||||||||||  ||||||||||||||||||||| |||||||||  |||||| || ||| |||||||||||    
T  20935181 gcttcagtatctgactgcaggtgttttgccaaaaaagcttcctacaccttgtatggatctaagtcatctttccttgagcataaacttcgat 20935271  T

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Target: chr4 (Bit Score: 49; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 21238228 - 21238292
Alignment:
Q  8 ctgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaag 72  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||||||||||| |||||||    
T  21238228 ctgcttcagtatttggctgcaggtgtcgttccagtaaagcttcctacaccttgtattcatctaag 21238292  T

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Target: chr5 (Bit Score: 31; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 17970515 - 17970585
Alignment:
Q  9 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttctt 79  Q
    ||||| ||||||||||||||||| || | |||||| ||||||| ||||||  ||||||||| |||| ||||    
T  17970515 tgctttagtatttggctgcaggtattgttccagtagagcttccgacacctattattgatcttagttctctt 17970585  T

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