View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594-Insertion-7 (Length: 859)
Name: NF1594-Insertion-7
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 684; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 29 - 855
Target Start/End: Original strand, 7464571 - 7465401
Alignment:
| Q |
29 |
tcttgatgaaatgaattggcacatgcctttgtttggctgtttttaaataattttactgttactagcaactatttgtaatcttcattattcaattttatat |
128 |
Q |
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| T |
7464571 |
tcttgatgaaatgaatgggcacatgcctttgtttggatgtttttaaataattttactgttactagcaactatttgtaatcttcattattcaattttatat |
7464670 |
T |
|
| Q |
129 |
agaagctaatagagaagcccttaataaaaaa--tgtaaagtaaagcttaattttttatnnnnnnnnca-taaactaacaagaatgtgacaatgttgggga |
225 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
7464671 |
agaagctaatagagaagccctagataaaaaaaatgtaaagtaaagcttaattttttataaaaaaaaaaataaactaacaagaatgtgacaatgttgggga |
7464770 |
T |
|
| Q |
226 |
aacaaggttggaagtttatgaccaatctggatactatagtaaaaagaattttcgaagtcataaatttcctacatgatgannnnnnnagaagcggtcttgg |
325 |
Q |
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| T |
7464771 |
aacaaggttggaagtttatgaccaacctggatactatagtaaaaagaattttcgaagtcataaatttcctacatgaggatttttttagaagcggtcttgg |
7464870 |
T |
|
| Q |
326 |
gacacaatccacgttatgtttagcatagtacatggtcgacccaaatggtgctgcaggagatcgacgatggaagattggttaagaaaagcggaggctcttg |
425 |
Q |
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| T |
7464871 |
gacacaatccacgttatgtttagcatagtacatggtcgacccaaatggtgctgcaggagatcgacgatggaagattggttaagaaaagcggaggctcttg |
7464970 |
T |
|
| Q |
426 |
ctattgctattgcaacatcaaggacaagtaacattcagagcatggtggttcatcaacttacagaccaaaataatggaaagtgaaatgaacagttggtgga |
525 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
7464971 |
ctattgctattgcaacatcaaggacaagtaacattcagagcatggtggttcatcaacttacagaccaaaataatggaacgtgaaatgaacaattggtgga |
7465070 |
T |
|
| Q |
526 |
ggaatttttatgacggagattcagaggatattatatgaattccgctactaaatgtctataaaagggaccaaattatttgacgttgtaataagcatggaaa |
625 |
Q |
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| T |
7465071 |
ggaatttttatgacggagattcagaggatattatatgaattccgctactagatgtctataaaagggactaaattatttgacgttttaataagcatggaaa |
7465170 |
T |
|
| Q |
626 |
ttatacagtgaagagtgcttatagcgtgtgtatggagagactattgaattgggatgagcttaaagttccaggagattggtcgtgtatttggtcgcttcga |
725 |
Q |
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| T |
7465171 |
ttatacggtgaagagtgcttatagcgtgtgtatggagagactgttgaattgggatgagcttaaagttccaggagattggtcgtgtatttggtcgcttcga |
7465270 |
T |
|
| Q |
726 |
atgtatgtactttcatatgcatttgttgaggaattgcttgggcaaaccatataaatcagta-gctaga-gtgtaatttgccgactttggtttgtaggttg |
823 |
Q |
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| T |
7465271 |
atgtatgtactttcatatgcatttgttgaggaattgctt-ggcaaaccatataaatcagtaggctagaggtgtaatttgccgactttggtgtgtaggttg |
7465369 |
T |
|
| Q |
824 |
cgatgatgatctgaaaaataattggcatgtgt |
855 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
7465370 |
cgatgatgatctgaaaaataattggcatgtgt |
7465401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 50316297 - 50316249
Alignment:
| Q |
214 |
caatgttggggaaacaaggttggaagtttatgaccaatctggatactat |
262 |
Q |
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|||||||| |||| ||||||||||| ||||||||||| ||||||||||| |
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| T |
50316297 |
caatgttgaggaatcaaggttggaaatttatgaccaagctggatactat |
50316249 |
T |
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