View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1594-Insertion-9 (Length: 872)
Name: NF1594-Insertion-9
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594-Insertion-9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 696; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 88 - 864
Target Start/End: Original strand, 33303889 - 33304661
Alignment:
| Q |
88 |
catcaaatctcagtcagtgccctctccaatcttactcacattgatctccacaacaattcactcactggtcctttgccttgtttgtcaaattccgtcatgc |
187 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33303889 |
catcaaatctcagtcagtgccctctctaatcttactcacattgatctccacaacaattcactcactagtcctttgccttgtttgtcaaattccgtcatgc |
33303988 |
T |
|
| Q |
188 |
ttgaaaccttgtaccttggtcacaataacttcacctccatgctagacttttgctttgtatcgacaaatagtcttagaaccttcaaccttagcaataactt |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33303989 |
ttgaaaccttgtaccttggtcacaataacttcacctccatgctagacttttgctttgtatggacaaatagtcttagaaccttcaaccttagcaataactt |
33304088 |
T |
|
| Q |
288 |
gaatcttgtcccatgggtaattacattgggtttaattgattcctcgttgttgcacacccttgatctcgaagctacaaatatcatagattacttggaatcg |
387 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33304089 |
gaatcttgtcccatgggtaattccattgggtttaattgattcctcgttgttgcacacccttgatctcgaagctacaaatatcatagattccttggaatcg |
33304188 |
T |
|
| Q |
388 |
ggaatgtttgattggtatccgagtttgcatactgtttttctctctaacaacatcaccagacctcttcccctgtctcttggccaaattatttcgcaacaat |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33304189 |
ggaatgtttgattggtatccgagtttgcatactgtttttctctctaacaacatcaccagacctcttcccctgtctcttggccaaattatttcgcaacaat |
33304288 |
T |
|
| Q |
488 |
taggtggaggacaaaatgaaactgcttctagtcatggagggccatctaaagcaagacttacacctgtttggattgtaggtatgtatgtatgtatatgata |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33304289 |
taggtggaggacaaaatgaaactgcttctagtcatggagggccatctaaagcaagacttacacctgtttggatt----gtatgtatgtatgtatatgata |
33304384 |
T |
|
| Q |
588 |
cccattctatatttaaacattttacccgttatatctgagagatttaacaatttaaaattactgattatatctttacgaatannnnnnngactagtttagt |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33304385 |
cccattctatatttaaacattttacccgttatatctgagagatttaacaatttaaagttactgattatatctttacgaatatttttttgactagtttagt |
33304484 |
T |
|
| Q |
688 |
tttaccaacttacccttattacttttgtgatgatagaatattgttcataattatcattaaattttttgaaacaatgtagggggcattgatgttaggcgtc |
787 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33304485 |
tttaccaacttactcttattacttttgtgatgatagaatattgttcataattatcattaaattttttgaaacaatgta-ggggcattgatgttaggcgtc |
33304583 |
T |
|
| Q |
788 |
ggaattgtaatacttattgtgattatttttaaacgcaaga-gtattctattttagtacagaggtggatcttcaaaaaa |
864 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33304584 |
ggaattgtaatacttattgtgattatttttaaacgcaagaggtattctattttagtacagaggtggatcttcaaaaaa |
33304661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 33303839 - 33303891
Alignment:
| Q |
8 |
tcaactccctctaactggtctaacaaaactcactactgcaaatggaatggcat |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33303839 |
tcaactccctctaactggtctaacaaaactcactactgcaaatggaatggcat |
33303891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 31535416 - 31535359
Alignment:
| Q |
9 |
caactccctctaactggtctaacaaaactcactactgcaaatggaatggcattgtttg |
66 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
31535416 |
caactccctctaactggtctaacaacactcactactgcagatggaacggcattgtttg |
31535359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 31550612 - 31550832
Alignment:
| Q |
9 |
caactccctctaactggtctaacaaaactcactactgcaaatggaatggcattgtttgccaatctagtcgagttgtcgccatcaaatctcagtcagtg-- |
106 |
Q |
| |
|
||||||| ||| |||||||||||| ||||| ||||||| |||| |||||| || ||||||||||||| |||||| |||||| || |||| |||||| |
|
|
| T |
31550612 |
caactccttctggctggtctaacaacactcatcactgcaattggactggcatcgtctgccaatctagtcaagttgtggccatc-aagctcactcagtggt |
31550710 |
T |
|
| Q |
107 |
-ccctctccaatcttactcacattgatctccacaacaattcactcactggtcctttgccttgtttgtcaaattccgtcatgcttgaaaccttgtaccttg |
205 |
Q |
| |
|
| ||| | ||||| || | ||||||||||||||||| |||||||| ||| |||| |||| | ||| | | | ||| |||||| | ||||||| |
|
|
| T |
31550711 |
acactccctaatctcacctatattgatctccacaacaactcactcaccggttctttaccttctatgtttgctctcttttcgctcgaaaccatttaccttg |
31550810 |
T |
|
| Q |
206 |
gtcacaataacttcacctccat |
227 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31550811 |
gtcacaataacttcacctccat |
31550832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 474 - 573
Target Start/End: Complemental strand, 31542838 - 31542739
Alignment:
| Q |
474 |
tatttcgcaacaattaggtggaggacaaaatgaaactgcttctagtcatggagggccatctaaagcaagacttacacctgtttggattgtaggtatgtat |
573 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||||||||| || ||||||| ||||||| ||| | || |||||| ||||||||| ||||||||| |
|
|
| T |
31542838 |
tatttcccaacaattaggtggaggagaaaacacaactgcttctcgtgatggaggctcatctaagacaacaattgcacctgcttggattgttggtatgtat |
31542739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University