View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_high_13 (Length: 396)
Name: NF15940_high_13
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 41479116 - 41479362
Alignment:
| Q |
17 |
ttcaccctattatatatcttatgttatattatcactacactaatttatcttgaaagatttaatacctcaactaatttacaaattttctgtaggtagctgt |
116 |
Q |
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| T |
41479116 |
ttcaccctagtatatatcttatgttatatcatcactacactaatttatcttgaaagatttaatacctcaactaatttacaaattttctgtaggtagctgt |
41479215 |
T |
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| Q |
117 |
gttgcacatctttgtgcataggctagtttatctggtgatggcagtctgagtgggctgggagcattttaatggtctgctgctgagggaatattttctggtt |
216 |
Q |
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| T |
41479216 |
gttgcacatctttgtgcataggctagtttatctggtgatggcagtctgagtgggctgggagcattttaatggtctgctgctgagggaatattttctggtt |
41479315 |
T |
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| Q |
217 |
tggatttctgcttggtcttgtgagcaagttttggaacttcagcaagc |
263 |
Q |
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| T |
41479316 |
tggatttctgcttggtcttgtgagcaagttttggaacttcagcaagc |
41479362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 41479430 - 41479474
Alignment:
| Q |
335 |
attgtatggctagtacatatggttttatcttggtgatctagtttg |
379 |
Q |
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| T |
41479430 |
attgtatggctagtacatatggttttatcttggtgatctagtttg |
41479474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 36377692 - 36377866
Alignment:
| Q |
56 |
ctaatttatcttgaaagatttaatacctcaactaatttacaaattttctgtaggtagctgtgttgcacatctttgtgcataggctagtttatctggtgat |
155 |
Q |
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| T |
36377692 |
ctaatttatcttgaaagatttaacgcctcaactaatttacaaattttctgtaggtagctgtattgcacatctttgtgcataggctagtttatctggtgat |
36377791 |
T |
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| Q |
156 |
ggc-------------agtctgagtgggctgggagcattttaatggtctgctgctgagggaatattttctggttt |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36377792 |
ggcagtttagcaactgagtctgagtgggctgggagcattttaatggtctgctgctgagggaatattttctggttt |
36377866 |
T |
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