View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_high_14 (Length: 393)
Name: NF15940_high_14
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_high_14 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 10161761 - 10162138
Alignment:
| Q |
16 |
caatcactttcatctgttttcaaaagggtcgttgttattcatgacacatatatggcatcagtggtacaagatgctaaaaacatagcgaatgttgagaatt |
115 |
Q |
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| T |
10161761 |
caatcactttcatctgttttcaaaagggtcgttgtaattcatgacacatatatggcttctgtggtacaagatgctaaaaacatagcgaatgttgagaatt |
10161860 |
T |
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| Q |
116 |
acatgtttgtcagcacatgtgcttttacagctttcacttccatttgggagagaatgggaaaaactccaattgaaagctcacatatcattgatgttccttc |
215 |
Q |
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| T |
10161861 |
acatgtttgtcagcacatgtgcttttacagctttcacttccatttgggagagaatgggaaaaactccaattgaaagctcacatatcattgatgttccttc |
10161960 |
T |
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| Q |
216 |
tatggaaggatgcttcacaaaccaattcgttgatttcatgatagcacaaaaggaattctgtgaatttagtaatgggagcatctacaatacaagcagagta |
315 |
Q |
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| T |
10161961 |
tatggaaggatgcttcacaaaccaattcgttgatttcatgattgcacaaatggaattctgtgaattcagtaatgggagcatctacaatacaaacagagta |
10162060 |
T |
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| Q |
316 |
atcgaaggtccttacttggagttgatagagaaaatcacttgcaataagaagcattgggcagtgggacccttcaaccct |
393 |
Q |
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| T |
10162061 |
atcgaaggtccttacttggaattgatagagaaaatcacttgcaataagaagcattgggcagtgggacccttcaaccct |
10162138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 1608765 - 1609139
Alignment:
| Q |
19 |
tcactttcatctgttttcaaaagggtcgttgttattcatgacacatatatggcatcagtggtacaagatgctaaaaacatagcgaatgttgagaattaca |
118 |
Q |
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| T |
1608765 |
tcactttcatctgttttcgaaaaggtcgttgtgattcatgatagtttaatggcatcagtggtacaagatgctaaaaacatagcaaatgttgagaattact |
1608864 |
T |
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| Q |
119 |
tgtttgtcagcacatgtgcttttacagctttcacttccatttgggagagaatgggaaaaactccaattgaaagctcacatatcattgatgttccttctat |
218 |
Q |
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| T |
1608865 |
cgtttcttagtacatgtgctttttcaattttcacttccatttgggagaaagtgggaaaacctccatttgaaagctcgcatattattgatgttccttctat |
1608964 |
T |
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| Q |
219 |
ggaaggatgcttcacaaaccaattcgttgatttcatgatagcacaaaaggaattctgtgaatttagtaatgggagcatctacaatacaagcagagtaatc |
318 |
Q |
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| T |
1608965 |
ggaaggatgcttcacaaccgaaatatatgacttcattaatgcacaaagtgaattctatgaattcagtgatggaagcatctataatacaagtagagttatt |
1609064 |
T |
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| Q |
319 |
gaaggtccttacttggagttgatagagaaaatcacttgcaataagaagcattgggcagtgggacccttcaaccct |
393 |
Q |
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| T |
1609065 |
gaaagtccttacttggagttgatagagagaatcacttgcagtaagaagcattgggcagttggacccttcaaccct |
1609139 |
T |
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