View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15940_high_17 (Length: 346)

Name: NF15940_high_17
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15940_high_17
NF15940_high_17
[»] chr2 (2 HSPs)
chr2 (16-329)||(45200040-45200352)
chr2 (141-239)||(21983195-21983293)
[»] chr6 (1 HSPs)
chr6 (139-245)||(3151583-3151689)
[»] chr1 (2 HSPs)
chr1 (147-221)||(1499297-1499371)
chr1 (148-215)||(1459378-1459445)
[»] chr4 (2 HSPs)
chr4 (141-242)||(48439763-48439864)
chr4 (142-229)||(44529646-44529733)
[»] chr3 (1 HSPs)
chr3 (148-243)||(50273336-50273431)
[»] chr8 (2 HSPs)
chr8 (145-215)||(975606-975676)
chr8 (148-229)||(26787234-26787315)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 45200040 - 45200352
Alignment:
Q  16 atcctgccaatctggtggttccccctgtatgttacaagtgacgagacagtaaaaaacaagcnnnnnnnncataagcaaatcaaatataacaatagccatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  45200040 atcctgccaatctggtggttccccctgtatgttacaagtgacgagacagtaaaaaacaagcaaaaaaa-cataagcaaatcaaatataacaatagccatg 45200138  T
Q  116 taatagcctaatcatatgaagaacgtacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45200139 taatagcctaatcatatgaagaacgtacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaa 45200238  T
Q  216 gcccaagaatttcaggaatttgctttcctgtttgagtgcaaattaattaagattagtcattgttatgaattaagaaattttgtaaaaatgcaattataga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45200239 gcccaagaatttcaggaatttgctttcctgtttgagtgcaaattaattaagattagtcattgttatgaattaagaaattttgtaaaaatgcaattataga 45200338  T
Q  316 ttagttgcatgatg 329  Q
    ||||||||||||||    
T  45200339 ttagttgcatgatg 45200352  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 21983195 - 21983293
Alignment:
Q  141 tacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttcaggaatttgct 239  Q
    |||||||||||| |||||| |||| |||||||| ||||| || |||||||||||||| |  |||||||||||||| ||||| || || |||| ||||||    
T  21983195 tacccctccattggccaatacaatggccatgattgcagctgcctccatgacccatgataatggattccacataaaacccaaaaacttgaggagtttgct 21983293  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 3151689 - 3151583
Alignment:
Q  139 cgtacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttcaggaatttgc 238  Q
    ||||| |||||||| ||||| |||||||||||||| || ||||||||||| |||||||| || |||||||||||||| ||||| || ||||  || ||||    
T  3151689 cgtactcctccattggccaaagcaatagccatgattgctgcagcttccatcacccatgaaagaggattccacataaatcccaaaaacttcaaaaacttgc 3151590  T
Q  239 tttcctg 245  Q
    |||||||    
T  3151589 tttcctg 3151583  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 1499297 - 1499371
Alignment:
Q  147 tccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaa 221  Q
    |||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |  |||||||||||||| |||||    
T  1499297 tccattagccaaagcaatggccatgatagcagcagcttccataacccatgataaaggattccacataaaacccaa 1499371  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 1459445 - 1459378
Alignment:
Q  148 ccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaa 215  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  || |||||||||||    
T  1459445 ccattagccaaagcaatggccataatagcagcagcttccataacccatgacaaagggttccacataaa 1459378  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 48439763 - 48439864
Alignment:
Q  141 tacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttcaggaatttgctt 240  Q
    ||||||||||||||||||| |||| ||||| |  |||||| | ||||| |||||||| || ||||||||||| || ||||||||||| || || ||||||    
T  48439763 tacccctccatttgccaatccaatggccataagggcagcaacctccataacccatgatagtggattccacatgaaacccaagaatttaagtaacttgctt 48439862  T
Q  241 tc 242  Q
    ||    
T  48439863 tc 48439864  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 44529733 - 44529646
Alignment:
Q  142 acccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttca 229  Q
    |||||||||||||| | |||||||||||| |||||||| || ||||| ||||| || || |||||||||||||| ||||  |||||||    
T  44529733 acccctccatttgcaagtgcaatagccattatagcagctgcctccataacccaagaaagaggattccacataaatcccagaaatttca 44529646  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 50273431 - 50273336
Alignment:
Q  148 ccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttcaggaatttgctttcc 243  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  |||||||||||||| || ||||| ||||  || |||||||||    
T  50273431 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcc 50273336  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 975606 - 975676
Alignment:
Q  145 cctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaa 215  Q
    ||||||| |||||  ||||| ||||||||||||||||||||||| |||||||| |  ||||||||||||||    
T  975606 cctccatgtgccatagcaatggccatgatagcagcagcttccataacccatgacaaaggattccacataaa 975676  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 26787315 - 26787234
Alignment:
Q  148 ccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttca 229  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  || ||||||||||| ||||| |||||||    
T  26787315 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataaagggttccacataaaacccaaaaatttca 26787234  T

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