View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15940_high_19 (Length: 313)

Name: NF15940_high_19
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15940_high_19
NF15940_high_19
[»] chr3 (3 HSPs)
chr3 (12-284)||(50732754-50733026)
chr3 (12-284)||(50779829-50780101)
chr3 (152-267)||(37120655-37120770)
[»] chr2 (1 HSPs)
chr2 (127-266)||(18927425-18927564)
[»] chr1 (1 HSPs)
chr1 (154-267)||(45338784-45338897)
[»] chr5 (1 HSPs)
chr5 (109-251)||(10349689-10349831)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 50733026 - 50732754
Alignment:
Q  12 atgaagtcaactatttccgtattttctccctctaactgaaatccttctcccacatcttcttttaaattgaacattgatgcatctgaataggagctatagt 111  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50733026 atgaagtcaactatttctgtattttctccctctaactgaaatccttctcccacatcttcttttaaattgaacattgatgcatctgaataggagctatagt 50732927  T
Q  112 tagagactcataaaattttattttagcggatgctatatgaaactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaatt 211  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50732926 tagagactcataaaattttattttagcggatgctgtatgaaactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaatt 50732827  T
Q  212 caatttgcctatgatatgaattttcaaaacattattgtggaaggtgtttctcttaagtcttaatgtggtgaag 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50732826 caatttgcctatgatatgaattttcaaaacattattgtggaaggtgtttctcttaagtcttaatgtggtgaag 50732754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 284
Target Start/End: Original strand, 50779829 - 50780101
Alignment:
Q  12 atgaagtcaactatttccgtattttctccctctaactgaaatccttctcccacatcttcttttaaattgaacattgatgcatctgaataggagctatagt 111  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50779829 atgaagtcaactatttctgtattttctccctctaactgaaatccttctcccacatcttcttttaaattgaacattgatgcatctgaataggagctatagt 50779928  T
Q  112 tagagactcataaaattttattttagcggatgctatatgaaactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaatt 211  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50779929 tagagactcataaaattttattttagcggatgctgtatgaaactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaatt 50780028  T
Q  212 caatttgcctatgatatgaattttcaaaacattattgtggaaggtgtttctcttaagtcttaatgtggtgaag 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50780029 caatttgcctatgatatgaattttcaaaacattattgtggaaggtgtttctcttaagtcttaatgtggtgaag 50780101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 267
Target Start/End: Original strand, 37120655 - 37120770
Alignment:
Q  152 aactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaattcaatttgcctatgatatgaattttcaaaacattattgtgg 251  Q
    |||||||||||||||| ||||| || |||||||||||||| | || ||| ||| ||||||||||||||||||||||||  ||||  ||||||||||||||    
T  37120655 aactttgaggcacttcctgatgctaccattgttgaagctcttggactttggttggcaattcaatttgcctatgatatgggttttagaaacattattgtgg 37120754  T
Q  252 aaggtgtttctcttaa 267  Q
    |||||| || ||||||    
T  37120755 aaggtgattatcttaa 37120770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 266
Target Start/End: Complemental strand, 18927564 - 18927425
Alignment:
Q  127 ttttattttagcggatgctatatgaaactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaattcaatttgcctatgat 226  Q
    ||||| ||||| || ||||  ||| |||||||||||||||| ||||| || |||||||||||||| |||||||  ||| |||||||||||| ||||||||    
T  18927564 ttttagtttagtggctgcttcatggaactttgaggcacttcctgatgctaccattgttgaagctcttagatttaggttggcaattcaattttcctatgat 18927465  T
Q  227 atgaattttcaaaacattattgtggaaggtgtttctctta 266  Q
    |||  ||||  ||||||||| |||||||||| ||||||||    
T  18927464 atgggttttagaaacattatcgtggaaggtgattctctta 18927425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 267
Target Start/End: Original strand, 45338784 - 45338897
Alignment:
Q  154 ctttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgcaattcaatttgcctatgatatgaattttcaaaacattattgtggaa 253  Q
    ||||||||| |||| ||| | |||||||| |||||||| | ||||| |||| ||||||||||||||||||||||||| ||||  ||||||| | ||||||    
T  45338784 ctttgaggcgcttcctgaagctaacattgctgaagctcttggatttcagttggcaattcaatttgcctatgatatgagtttttgaaacattgtcgtggaa 45338883  T
Q  254 ggtgtttctcttaa 267  Q
     || ||||||||||    
T  45338884 tgtatttctcttaa 45338897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 10349831 - 10349689
Alignment:
Q  109 agttagagactcataaaattttattttagcggatgctatatgaaactttgaggcacttcttgatgataacattgttgaagctcatagattttagtttgca 208  Q
    |||||||||||||| |  |||| |||||||   ||| | ||| ||||||||||| |||||||||| ||| |||| | ||| || | |||||| |||  ||    
T  10349831 agttagagactcattatgttttgttttagcaactgccacatggaactttgaggcgcttcttgatgctaatattgctaaagttcttggattttggttgcca 10349732  T
Q  209 attcaatttgcctatgatatgaattttcaaaacattattgtgg 251  Q
    |||||||||| |||| ||||   ||||| ||||||| ||||||    
T  10349731 attcaatttgtctataatataggttttcgaaacattgttgtgg 10349689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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