View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15940_high_2 (Length: 709)

Name: NF15940_high_2
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15940_high_2
NF15940_high_2
[»] chr5 (1 HSPs)
chr5 (19-695)||(43365973-43366649)


Alignment Details
Target: chr5 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 19 - 695
Target Start/End: Complemental strand, 43366649 - 43365973
Alignment:
Q  19 gttgctaatatcttccttttgtttcttcgaatttgaagacaagtgaaggtacttacaagcatgatctatggaattcgaggaactcgcagcttttctctgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43366649 gttgctaatatcttccttttgtttcttcgaatttgaagacaagtgaaggtacttacaagcatgatctatggaattcgaggaactcgcagcttttctctgc 43366550  T
Q  119 ctgcagtaatgccggtgtcaactttgcaagtaaacttcatcctagactcctagctagtccttttttcatctcatcaatttaattttgattgagtgtattt 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  43366549 ctgcagttatgccggtgtcaactttgcaagtaaacttcatcctagactcctag----tccttttttcatctcatcaatttaattttgattgagtgtattt 43366454  T
Q  219 atttatatttctaattgttgcagaggctaatagcaaaactcatccggaccgatacttgttaatcgcaaccagtggaggcttaaatcaacagagaacaggg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43366453 atttatatttctaattgttgcagaggctaatagcaaaactcatccggaccgatacttgttaatcgcaaccagtggaggcttaaatcaacagagaacaggg 43366354  T
Q  319 gtaagctaagcttctttattaatgaactgtggcatttgtttgtttttgcaatccttttgatcaaataaata----taaaggaaggagttcagtgaggtta 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  43366353 gtaagctaagcttctttattaatgaactgtggcatttgtttgtttttgcaatccttttgatcaaataaataaatataaaggaaggagttcagtgaggtta 43366254  T
Q  415 aagtattacttggaatatgtatatctttctttatgtaaccaaattgttttatttaagcatgaatagttcttccatttcattagtagacataattgcattc 514  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43366253 aagtattacttggaatatgtatatctttctttatgtaaccaattttttttatttaagcatgaatagttcttccatttcattagtagacataattgcattc 43366154  T
Q  515 tgagtactaatataactatgctgcaatctaaaacatgtaatatgtaatatgctataactttatttcatagagtgggaccgtggtcatttgcaaaaaagta 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43366153 tgagtactaatataactatgctgcaatctaaaacatgtaatatgtaatatgctataactttatttcatagagtgggaccctggtcatttgcaaaaaagta 43366054  T
Q  615 taggatgaaatttctacccaataattataggtctgcacaaattggtgattgatatacagattttgtatgtgccgttcggct 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43366053 taggatgaaatttctacccaataattataggtctgcacaaattggtgatcgatatacagattttgtatgtgccgttcggct 43365973  T

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