View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15940_high_22 (Length: 282)
Name: NF15940_high_22
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_high_22 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0005 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 192934 - 192669
Alignment:
| Q |
1 |
atgaaacaaaacataaatctatcttacttgctcgactgatcattagcgtaggtgttatgatccgcggctcaggaaccaattcagcctccacacccttagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
192934 |
atgaaacaaaacataaatctatcttacttgctcgactgatcattagcgtaggtgttatgatccgcggctcaggaaccaattcagcctccacacccttagc |
192835 |
T |
|
| Q |
101 |
caaagaaataatgacaggaactgtgattctctctttccaatatttactaatttcttcaaacacctcacgggtttctgtcgatggcaagccgttaatcaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
192834 |
caaagaaataatgacaggaactgtgattctctctttccaatacttactaatttcttcaaacacctcacgggtttctgtcgatggcaagccgttaatcaca |
192735 |
T |
|
| Q |
201 |
atgtcagcatcccatacagcttcctgtaagttcgtcacaaccttcaaagggcaaacaggtgtatca |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
192734 |
atgtcagcatcccatacagcttcctgtaagttcgtcacaaccttcaaagggcaaacaggtgtatca |
192669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 14624449 - 14624714
Alignment:
| Q |
1 |
atgaaacaaaacataaatctatcttacttgctcgactgatcattagcgtaggtgttatgatccgcggctcaggaaccaattcagcctccacacccttagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14624449 |
atgaaacaaaacataaatctatcttacttgctcgactgatcattagcgtaggtgttatgatccgcggctcaggaaccaattcagcctccacacccttagc |
14624548 |
T |
|
| Q |
101 |
caaagaaataatgacaggaactgtgattctctctttccaatatttactaatttcttcaaacacctcacgggtttctgtcgatggcaagccgttaatcaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14624549 |
caaagaaataatgacaggaactgtgattctctctttccaatacttactaatttcttcaaacacctcacgggtttctgtcgatggcaagccgttaatcaca |
14624648 |
T |
|
| Q |
201 |
atgtcagcatcccatacagcttcctgtaagttcgtcacaaccttcaaagggcaaacaggtgtatca |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14624649 |
atgtcagcatcccatacagcttcctgtaagttcgtcacaaccttcaaagggcaaacaggtgtatca |
14624714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 266
Target Start/End: Complemental strand, 35877512 - 35877338
Alignment:
| Q |
92 |
acccttagccaaagaaataatgacaggaactgtgattctctctttccaatatttactaatttcttcaaacacctcacgggtttctgtcgatggcaagccg |
191 |
Q |
| |
|
|||||||| |||||| || || |||||||| | |||||||| |||||||| |||||||| ||||| || | |||||| ||||| || || ||||| || |
|
|
| T |
35877512 |
acccttagacaaagagattataacaggaacactaattctctccttccaatacttactaatctcttcgaaaatctcacgagtttcggttgaaggcaaacca |
35877413 |
T |
|
| Q |
192 |
ttaatcacaatgtcagcatcccatacagcttcctgtaagttcgtcacaaccttcaaagggcaaacaggtgtatca |
266 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| || || || || ||||| |||||||| |||||||| |||||| |
|
|
| T |
35877412 |
ttaacaacaatatcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatca |
35877338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University