View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_high_26 (Length: 252)
Name: NF15940_high_26
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 6 - 236
Target Start/End: Original strand, 43366611 - 43366838
Alignment:
| Q |
6 |
tcttcgaatttgaagacacgaaaggaagatattagcaacataacaaaaaatgcatnnnnnnngaaggtgagaacattgtttgattaccggaatgtgaaat |
105 |
Q |
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| T |
43366611 |
tcttcaaattcgaagaaacaaaaggaagatattagcaacataacaaaaaatgaataaaaa---aaggtgagaacattgtttgattaccggaatgtgaaat |
43366707 |
T |
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| Q |
106 |
ggggattgctgatgagaatctaaacgagatttaaccaaatcattatcctgaaatacaatcaaagttacacacagcagcagaatggaatgaggaatgtaat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43366708 |
ggggattgctgatgagaatctaaacgagatttaaccaaatcattatcctgaaatacaatcaaagttacacacagcagcaaaatggaatgaggaatgtaat |
43366807 |
T |
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| Q |
206 |
tgaagtagaaggatgaagagcatttacaata |
236 |
Q |
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| T |
43366808 |
tgaagtagaaggatgaagagcatttacaata |
43366838 |
T |
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