View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_high_29 (Length: 239)
Name: NF15940_high_29
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_high_29 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40612006 - 40611768
Alignment:
| Q |
1 |
attgatatgtagatggatcgatccagtagataatatttattttgacaactctaactatgaagttttccatagagattatgtcaccattaagaaatatgta |
100 |
Q |
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| T |
40612006 |
attgatatgtagatggatcgatccagtagataatatttattttgacaactctaactatgaagttttccatagagattatgtcaccattaagaaatatgta |
40611907 |
T |
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| Q |
101 |
aatacttagcatcaagaagatgattatcaaaagaaaaatatagatgttcaatatatagaaataggataaatttagggaaataaagagaatacctgtgaag |
200 |
Q |
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| T |
40611906 |
aatacttagcatcaagaagatgattatcaaaagaaaaatatagatgttcaatatatagaaataggataaatttaggggaataaagagaatacctgtgaag |
40611807 |
T |
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| Q |
201 |
tgccaaggatgttgcgaggccagcaattccagctcccac |
239 |
Q |
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| T |
40611806 |
tgccaaggatgttgtgaggccagcaattccagctcccac |
40611768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 51067544 - 51067590
Alignment:
| Q |
190 |
tacctgtgaagtgccaaggatgttgcgaggccagcaattccagctcc |
236 |
Q |
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| T |
51067544 |
tacctgtgaagtcccaaggatgttgtgaggccagcaattccagctcc |
51067590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 51033492 - 51033541
Alignment:
| Q |
190 |
tacctgtgaagtgccaaggatgttgcgaggccagcaattccagctcccac |
239 |
Q |
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| T |
51033492 |
tacctgtgaagtgccaaagatgttgtgagaccagcaattccagctcccac |
51033541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 40612060 - 40612007
Alignment:
| Q |
92 |
aaatatgtaaatacttagcatcaagaagatgattatcaaaagaaaaatatagatg |
146 |
Q |
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| T |
40612060 |
aaatatgtaa-tacttcacatcaagaatatgattatcaaaagaaaaatatagatg |
40612007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 51036891 - 51036949
Alignment:
| Q |
181 |
taaagagaatacctgtgaagtgccaaggatgttgcgaggccagcaattccagctcccac |
239 |
Q |
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| T |
51036891 |
taaagacaatacctgtaaagtcctaaggatgttgtgagtccagcaattccagctcccac |
51036949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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