View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_high_3 (Length: 531)
Name: NF15940_high_3
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 303 - 523
Target Start/End: Original strand, 38015464 - 38015684
Alignment:
| Q |
303 |
aaatgttcacatattatatattttcctttattaatgacagaaacaaacagaagccaagcacatacctttttcttcgtaatgaggtaatcaaactcgagca |
402 |
Q |
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| T |
38015464 |
aaatgttcacatattatatattttcctttattaatgacagaaacaaacagaagacaagcacatacctttttcttcgtaatgaggtaatcaaactccatca |
38015563 |
T |
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| Q |
403 |
atgtcaggctaaccagttcatctaactcaggtagccaagtgagcttcagttttgtggtcttcacagatccttcaagatgtaaaacaccacttaaccctgt |
502 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38015564 |
atgtcaggctaactaattcatctaactcaggtagccaagtgagcttcagttttgtggtcttcacagatccttcaagatgtaaaacaccacttaaccctgt |
38015663 |
T |
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| Q |
503 |
gacattcccatcttggtcctt |
523 |
Q |
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| T |
38015664 |
gacattcccatcttggtcctt |
38015684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 38015313 - 38015429
Alignment:
| Q |
61 |
tgacaaacagacagcaacatcaaataagaagtgtctttcataggacactttgcagaagaaataatgttccacgcttcgacccaatattaatgaagtgcaa |
160 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |
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| T |
38015313 |
tgacaaacagacagcaagatcaaacaagaagtgtctttcataggacactttgcagaagaactaatgtttcacacttcgacccaatattaatgaagtgcaa |
38015412 |
T |
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| Q |
161 |
ttgtttcatgagcacaa |
177 |
Q |
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| T |
38015413 |
ttctttcatgagcacaa |
38015429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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