View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_high_33 (Length: 231)
Name: NF15940_high_33
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_high_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 36127596 - 36127366
Alignment:
| Q |
1 |
atgaagtgttggcattgataaacttgaggtgcaacaacaacaatgaagaaaaggaaggaaacagcaataacaaggcaccactttgggagagaatttcaca |
100 |
Q |
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| T |
36127596 |
atgaagtgttggcattgataaacttgaggtgcaacaacaacaatgaagaaaaggaaggaaacagcaataacaaggcaccactttgggagagaatttcaca |
36127497 |
T |
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| Q |
101 |
aggaatgttggagttaggatacaagagaagtgcaaagagatgcaaagagaagtgggagaatatcaacaagtatttcagaaaaacaaaggatgctaatacg |
200 |
Q |
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| T |
36127496 |
aggaatgttggagttaggatacaagagaagtgcaaagagatgcaaagagaagtgggagaatatcaacaagtatttcagaaaaacaaaggatgctaatagg |
36127397 |
T |
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| Q |
201 |
aaaagaacacttgattcaagaacttgtcctt |
231 |
Q |
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| T |
36127396 |
aaaagatcacttgattcaagaacttgtcctt |
36127366 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 191
Target Start/End: Original strand, 47422822 - 47422929
Alignment:
| Q |
84 |
tgggagagaatttcacaaggaatgttggagttaggatacaagagaagtgcaaagagatgcaaagagaagtgggagaatatcaacaagtatttcagaaaaa |
183 |
Q |
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||||||||||| || |||| ||||| ||||| |||||||||||||| |||||||| || ||||| || ||||| || || || |||||||| | ||| | |
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| T |
47422822 |
tgggagagaatctctgaagggatgtttgagttgggatacaagagaagcgcaaagaggtgtaaagaaaaatgggaaaacataaataagtattttaaaaaga |
47422921 |
T |
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| Q |
184 |
caaaggat |
191 |
Q |
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| T |
47422922 |
caaaggat |
47422929 |
T |
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