View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_high_5 (Length: 503)
Name: NF15940_high_5
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 467
Target Start/End: Complemental strand, 5298269 - 5297820
Alignment:
| Q |
12 |
tactacatgtttgacatctttggtttgagttttatgtattttcatgttgtgctcaacgtgattagtttgactatgcttttgagtatttgtattgagactt |
111 |
Q |
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| T |
5298269 |
tactacatgtttgacatctttggtttgagttttatgtattttcatgctgtgcttaacgtgattagtttgactatgcttttgactatttgtattgagactt |
5298170 |
T |
|
| Q |
112 |
gttttagtattcaacctcattttctacgctgatttgaacgttgaagtgttaacgtgcctgaagacacacttcgtttcaccatgaggaccgcactgctacc |
211 |
Q |
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| T |
5298169 |
gttttagtattcaacctcattttctatgctgatttgaacgttgaagtgttaacgtgtctgaagacacacttcg-ttcatcatgaggaccgcaccgctacc |
5298071 |
T |
|
| Q |
212 |
gtgtcggagcaccgcaccgtcaccgcaaattgcattcatccgtcataattggacaaatnnnnnnnttaatatttgtcacgatagaatcaaacacactaat |
311 |
Q |
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| T |
5298070 |
gtgccggagcaccgcaccgtcacc----attgcattcatccgtcattattggacaaat-aaaaaattaatatttgtcacgatagaatcaaacacactaat |
5297976 |
T |
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| Q |
312 |
ttattttccaattgccaaacnnnnnnngggattagattagggttaacagtgaaattctcataacaagtaaacaatgaggatcggtttggaacagatataa |
411 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297975 |
ttattttccaattgccaaactttttttgggattagattagggttaacagtgaaattctcataacaagtaaacaatgaggatcggtttggaacagatataa |
5297876 |
T |
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| Q |
412 |
tataaaaattactatgataggtaaattgtcaaaatcaaactatagattaccatgca |
467 |
Q |
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| T |
5297875 |
tataaaaattactatgataggtaaattgtcaaaatcaaactatagattaccatgca |
5297820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 17560816 - 17560702
Alignment:
| Q |
120 |
attcaacctcattttctacgctgatttgaacgttgaagtgttaacgtgcctgaagacacacttcgtttcaccatgaggaccgcactgctaccgtgtcgga |
219 |
Q |
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|||||||||||||| |||| |||| |||| ||||| || ||||||||||| |||||| |||| ||||||| ||||||| ||| || || ||| |||| |
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| T |
17560816 |
attcaacctcatttcctacactgacttgagcgttgggctgctaacgtgcctgcagacacccttcatttcaccgtgaggacaacacagccactgtgccgga |
17560717 |
T |
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| Q |
220 |
gcaccgcaccgtcac |
234 |
Q |
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|||| ||||||||| |
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| T |
17560716 |
gcacgacaccgtcac |
17560702 |
T |
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