View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15940_low_1 (Length: 923)

Name: NF15940_low_1
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15940_low_1
NF15940_low_1
[»] chr5 (11 HSPs)
chr5 (441-755)||(11335599-11335917)
chr5 (22-268)||(11336209-11336464)
chr5 (279-437)||(11335995-11336153)
chr5 (833-912)||(11335151-11335230)
chr5 (96-201)||(43379448-43379553)
chr5 (639-732)||(24136585-24136679)
chr5 (833-899)||(11335202-11335269)
chr5 (833-902)||(11335120-11335192)
chr5 (867-900)||(11335312-11335345)
chr5 (96-201)||(43378572-43378677)
chr5 (833-885)||(11335289-11335341)
[»] chr6 (11 HSPs)
chr6 (655-732)||(21861811-21861888)
chr6 (657-732)||(9402981-9403056)
chr6 (839-890)||(22860895-22860946)
chr6 (655-732)||(13167196-13167273)
chr6 (96-135)||(13208225-13208264)
chr6 (98-156)||(3163534-3163592)
chr6 (213-255)||(10740746-10740788)
chr6 (839-888)||(18981357-18981407)
chr6 (865-899)||(22860737-22860771)
chr6 (851-900)||(22860868-22860918)
chr6 (96-201)||(13207346-13207451)
[»] chr2 (10 HSPs)
chr2 (851-900)||(29409358-29409407)
chr2 (851-899)||(38583917-38583965)
chr2 (102-149)||(3466658-3466705)
chr2 (643-690)||(32290392-32290441)
chr2 (203-268)||(8985740-8985805)
chr2 (851-900)||(8986315-8986364)
chr2 (840-890)||(8986342-8986394)
chr2 (851-900)||(8986463-8986512)
chr2 (863-900)||(38584023-38584060)
chr2 (96-149)||(39062863-39062916)
[»] chr4 (7 HSPs)
chr4 (655-693)||(16870260-16870298)
chr4 (838-886)||(16871166-16871216)
chr4 (865-899)||(16871155-16871189)
chr4 (203-268)||(16869676-16869741)
chr4 (851-900)||(16870846-16870895)
chr4 (840-890)||(16870873-16870925)
chr4 (851-900)||(16870994-16871043)
[»] chr7 (5 HSPs)
chr7 (863-900)||(26403160-26403197)
chr7 (96-149)||(35752377-35752430)
chr7 (840-890)||(46963711-46963763)
chr7 (851-900)||(46963741-46963790)
chr7 (203-268)||(46964298-46964363)
[»] chr3 (3 HSPs)
chr3 (655-720)||(50295310-50295375)
chr3 (851-896)||(42530833-42530879)
chr3 (866-900)||(50295873-50295907)
[»] chr8 (1 HSPs)
chr8 (121-187)||(3582072-3582138)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-105; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 441 - 755
Target Start/End: Complemental strand, 11335917 - 11335599
Alignment:
Q  441 cataattgggaatatatagaggaatcatattttgtttgtggattttggagtcagatttgcatccgattattctcctt---ttcattattcttttaattta 537  Q
    ||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||| ||||| ||||||||||| |||   |||||| |||||||||||||    
T  11335917 cataattgggaatatatggaggaattagattttgtttgtgggttttggagtcagacttgcagccgattattcttcttcttttcattgttcttttaattta 11335818  T
Q  538 atcaaggttggtggttctttttgcttgagttttatgtttgggctgatctccnnnnnnnggtttatttacttgagtctagtaatccgtttgtgagnnnnnn 637  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||       ||||||||||| ||||||||||||||||||||||||          
T  11335817 atcaaggttggtggttctttttgcttgagttttatgtttgggccgatctcctttttttggtttatttacgtgagtctagtaatccgtttgtgagtttttt 11335718  T
Q  638 nagtcttcgtgtgtttatgtgtttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgtttag-tc 736  Q
     ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |     
T  11335717 tagtcttcgtgtgtttctgtatttgtgtttggttaattggttgttcgtctctgtctgactctagttgctttggttcaacttgttttggtttgtttagttt 11335618  T
Q  737 ggttcgttttggtgcttca 755  Q
    |||||||||||||| ||||    
T  11335617 ggttcgttttggtgtttca 11335599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 22 - 268
Target Start/End: Complemental strand, 11336464 - 11336209
Alignment:
Q  22 atgtgtgtgttgtatcagagagaagagaagaggagacgcacgtgtaggcttttttgt--tcatctagnnnnnnnnn-------caaaccttttaatccta 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||                 |||||||||||||||||    
T  11336464 atgtgtgtgttgtatcagagagaagagaagaggagacgcgcgtgtaggcttttttgtgttcatctaaatagtttttttttttccaaaccttttaatccta 11336365  T
Q  113 acccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagatgaactcgtatatttgtg 212  Q
    ||||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  11336364 acccttgcttttatgtttgtcacatgtcacacacctaaaagctggaccggggaaaatggaggcttcctaaatggaagaaagatgaactcgtgtatttgtg 11336265  T
Q  213 ttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 268  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11336264 ttgtttacatggtatcaagagcatggtttgattcttcttaaattactcgtcgcttc 11336209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 279 - 437
Target Start/End: Complemental strand, 11336153 - 11335995
Alignment:
Q  279 atctttatcttgattgaagactgattgtatttgttggttattgtgcattcgtcgctnnnnnnnttatttgactccgattgactctttgttgaaacactga 378  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||     
T  11336153 atctttattttgattgaagactgattatatttgttggttattgtgcattcgtcgctaaaaaaattatttgactccgattgactctttgttgaaacaatgt 11336054  T
Q  379 tgttggtggatttgaaattgccnnnnnnngttgtttgcttttatggctacatttggatt 437  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  11336053 tgttggtggatttgaaattgcctttttgtgttgtttgcttttatggctacatttggatt 11335995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 833 - 912
Target Start/End: Complemental strand, 11335230 - 11335151
Alignment:
Q  833 ttctcctgattgattgctttgcacttctcaccttttgattcttctgattgattgcattgcacttctcctcccctgatgat 912  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11335230 ttctcctgattgattgctttgcacttctcaccttttgattcttctgattgattgcattgcacttctcctccccttatgat 11335151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 43379448 - 43379553
Alignment:
Q  96 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 195  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||| | |||||  |||| |||||||| |||| | ||||||  ||||||    
T  43379448 caaaccttttaatcccaacccttgcttttatttttgccacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagat 43379547  T
Q  196 gaactc 201  Q
    ||||||    
T  43379548 gaactc 43379553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 639 - 732
Target Start/End: Original strand, 24136585 - 24136679
Alignment:
Q  639 agtcttcgtgtgttta--tgtgtttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgttt 732  Q
    |||||||||||||||   |||||||||||||||||||||||||||| |||| |||||| || | |||||||| ||||| ||||| |||||| ||||    
T  24136585 agtcttcgtgtgtttcattgtgtttgtgtttggttaattggttgtttgtctatgtctgtct-tggttgctttggttcagcttgtcttggttcgttt 24136679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 833 - 899
Target Start/End: Complemental strand, 11335269 - 11335202
Alignment:
Q  833 ttctcctgattgattgctttgcacttctcacctt-ttgattcttctgattgattgcattgcacttctc 899  Q
    ||||||| |||||||||||||||||||||  ||| |||||||| |||||||||||| |||||||||||    
T  11335269 ttctccttattgattgctttgcacttctcctcttattgattctcctgattgattgctttgcacttctc 11335202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 833 - 902
Target Start/End: Complemental strand, 11335192 - 11335120
Alignment:
Q  833 ttctcctgattgattgctttgcacttctca---ccttttgattcttctgattgattgcattgcacttctcctc 902  Q
    |||| |||||||||||| |||||||||||    |||| ||||||||||||||||||||  |||||||||||||    
T  11335192 ttcttctgattgattgcattgcacttctcctccccttatgattcttctgattgattgccctgcacttctcctc 11335120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 867 - 900
Target Start/End: Complemental strand, 11335345 - 11335312
Alignment:
Q  867 ttgattcttctgattgattgcattgcacttctcc 900  Q
    ||||||||||||||||||||||||||||||||||    
T  11335345 ttgattcttctgattgattgcattgcacttctcc 11335312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 43378677 - 43378572
Alignment:
Q  96 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 195  Q
    ||||||||||||||  ||||||||||||||| |||| ||| ||||| |||||||| | || ||  |||  |||||||| |||| | ||||||  ||||||    
T  43378677 caaaccttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctagaatggggtaaatggagccttcataaatggagcaaagat 43378578  T
Q  196 gaactc 201  Q
    ||||||    
T  43378577 gaactc 43378572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 833 - 885
Target Start/End: Complemental strand, 11335341 - 11335289
Alignment:
Q  833 ttctcctgattgattgctttgcacttctcaccttttgattcttctgattgatt 885  Q
    |||| |||||||||||| ||||||||||| |||||| |||||| |||||||||    
T  11335341 ttcttctgattgattgcattgcacttctccccttttcattcttttgattgatt 11335289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 655 - 732
Target Start/End: Original strand, 21861811 - 21861888
Alignment:
Q  655 tgtgtttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgttt 732  Q
    ||||||||||||||||||||||||||||||||| ||| || |||| |||||||| | ||| ||||| |||||| ||||    
T  21861811 tgtgtttgtgtttggttaattggttgttcgtctatgtatgtctctggttgctttggctcagcttgtcttggttcgttt 21861888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 657 - 732
Target Start/End: Original strand, 9402981 - 9403056
Alignment:
Q  657 tgtttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgttt 732  Q
    ||||||||||||||||||||||||||| ||| ||| ||  ||  |||||||| ||||||||||| |||||| ||||    
T  9402981 tgtttgtgtttggttaattggttgttcctctttgtttgtttcgggttgctttggttcaacttgtcttggttcgttt 9403056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 839 - 890
Target Start/End: Original strand, 22860895 - 22860946
Alignment:
Q  839 tgattgattgctttgcacttctcaccttttgattcttctgattgattgcatt 890  Q
    ||||||||||| ||||||||||| ||||||| |||||| |||||||||||||    
T  22860895 tgattgattgcattgcacttctccccttttggttcttccgattgattgcatt 22860946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 732
Target Start/End: Original strand, 13167196 - 13167273
Alignment:
Q  655 tgtgtttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgttt 732  Q
    ||||||||| ||||||||||||||||||||| | ||| || |||| |||||||| | ||| ||||| |||||| ||||    
T  13167196 tgtgtttgtatttggttaattggttgttcgtttatgtttgtctctggttgctttgggtcagcttgtcttggttcgttt 13167273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 13208225 - 13208264
Alignment:
Q  96 caaaccttttaatcctaacccttgcttttatgtttgtcac 135  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  13208225 caaaccttttaatcccaacccttgcttttatttttgtcac 13208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 3163592 - 3163534
Alignment:
Q  98 aaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactg 156  Q
    |||||||| ||||||||||||| |||||| |||| ||||||||  ||||||| ||||||    
T  3163592 aaccttttgatcctaacccttggttttatttttgacacatgtcgcacatctataaactg 3163534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 10740746 - 10740788
Alignment:
Q  213 ttgtttacatggtatcaagagcatggtttgattcttcttgaat 255  Q
    ||||| |||||||||||||||||||||||||| || |||||||    
T  10740746 ttgttaacatggtatcaagagcatggtttgatcctccttgaat 10740788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 839 - 888
Target Start/End: Original strand, 18981357 - 18981407
Alignment:
Q  839 tgattgattgctttgcacttct-caccttttgattcttctgattgattgca 888  Q
    ||||||||||| |||||||| | | ||||||||||||||||||||||||||    
T  18981357 tgattgattgcattgcactttttctccttttgattcttctgattgattgca 18981407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 865 - 899
Target Start/End: Original strand, 22860737 - 22860771
Alignment:
Q  865 ttttgattcttctgattgattgcattgcacttctc 899  Q
    |||||||||||||| ||||||||||||||||||||    
T  22860737 ttttgattcttctgtttgattgcattgcacttctc 22860771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 851 - 900
Target Start/End: Original strand, 22860868 - 22860918
Alignment:
Q  851 ttgcacttctcacctt-ttgattcttctgattgattgcattgcacttctcc 900  Q
    ||||||||||| || | ||||||||| ||||||||||||||||||||||||    
T  22860868 ttgcacttctccccctattgattcttttgattgattgcattgcacttctcc 22860918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 13207451 - 13207346
Alignment:
Q  96 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 195  Q
    |||| |||||||||  ||||||||||||||| |||| ||| ||||| |||||||| | |||||  |||  ||||| || |||| | ||||||  ||||||    
T  13207451 caaatcttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctggaatggggtaaatgtagccttcgtaaatggagtaaagat 13207352  T
Q  196 gaactc 201  Q
    ||||||    
T  13207351 gaactc 13207346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 851 - 900
Target Start/End: Complemental strand, 29409407 - 29409358
Alignment:
Q  851 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 900  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  29409407 ttgcacgtctcccctgttgattcttctgattgattgcattgcacttctcc 29409358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 851 - 899
Target Start/End: Complemental strand, 38583965 - 38583917
Alignment:
Q  851 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctc 899  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||||||    
T  38583965 ttgcacttctccccctttgattcttctgattgattgtattgcacttctc 38583917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 3466705 - 3466658
Alignment:
Q  102 ttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 149  Q
    |||||||||||||||||| |||||| ||||||| |||||| |||||||    
T  3466705 ttttaatcctaacccttgattttatttttgtcatatgtcacacatcta 3466658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 690
Target Start/End: Original strand, 32290392 - 32290441
Alignment:
Q  643 ttcgtgtgtttat--gtgtttgtgtttggttaattggttgttcgtctctg 690  Q
    |||||||||||||  ||||||||| ||| |||||||||||||||||||||    
T  32290392 ttcgtgtgtttatttgtgtttgtgcttgattaattggttgttcgtctctg 32290441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 8985740 - 8985805
Alignment:
Q  203 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 268  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  8985740 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 8985805  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 900
Target Start/End: Original strand, 8986315 - 8986364
Alignment:
Q  851 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 900  Q
    ||||||||||| ||| ||| |||||| |||||||||||||| ||||||||    
T  8986315 ttgcacttctcccctattggttcttccgattgattgcattgtacttctcc 8986364  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 840 - 890
Target Start/End: Original strand, 8986342 - 8986394
Alignment:
Q  840 gattgattgctttgcacttctcac--cttttgattcttctgattgattgcatt 890  Q
    |||||||||| ||| ||||||| |  |||||||||||||||||||||||||||    
T  8986342 gattgattgcattgtacttctcccatcttttgattcttctgattgattgcatt 8986394  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 900
Target Start/End: Original strand, 8986463 - 8986512
Alignment:
Q  851 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 900  Q
    ||||||||||  ||| ||| |||||| |||||||||||||||||||||||    
T  8986463 ttgcacttctaccctattggttcttccgattgattgcattgcacttctcc 8986512  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 863 - 900
Target Start/End: Complemental strand, 38584060 - 38584023
Alignment:
Q  863 ccttttgattcttctgattgattgcattgcacttctcc 900  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  38584060 ccttttgatttttctgagtgattgcattgcacttctcc 38584023  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 39062863 - 39062916
Alignment:
Q  96 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 149  Q
    ||||||||||||||||| || ||| ||||||  ||| |||||||||||||||||    
T  39062863 caaaccttttaatcctagccattgattttattgttgccacatgtcatacatcta 39062916  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 693
Target Start/End: Original strand, 16870260 - 16870298
Alignment:
Q  655 tgtgtttgtgtttggttaattggttgttcgtctctgtct 693  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  16870260 tgtgtttgtgtttggttaattggttgttcgtctatgtct 16870298  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 838 - 886
Target Start/End: Original strand, 16871166 - 16871216
Alignment:
Q  838 ctgattgattgctttgcacttctcacc--ttttgattcttctgattgattg 886  Q
    |||||||||||| ||||||||||| ||  ||||||||||||||||||||||    
T  16871166 ctgattgattgcattgcacttctctccccttttgattcttctgattgattg 16871216  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 865 - 899
Target Start/End: Original strand, 16871155 - 16871189
Alignment:
Q  865 ttttgattcttctgattgattgcattgcacttctc 899  Q
    ||||||||| |||||||||||||||||||||||||    
T  16871155 ttttgattcgtctgattgattgcattgcacttctc 16871189  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 16869676 - 16869741
Alignment:
Q  203 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 268  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  16869676 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 16869741  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 900
Target Start/End: Original strand, 16870846 - 16870895
Alignment:
Q  851 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 900  Q
    ||||||||||| ||| ||| |||||| |||||||||||||| ||||||||    
T  16870846 ttgcacttctcccctgttggttcttccgattgattgcattgtacttctcc 16870895  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 840 - 890
Target Start/End: Original strand, 16870873 - 16870925
Alignment:
Q  840 gattgattgctttgcacttctcac--cttttgattcttctgattgattgcatt 890  Q
    |||||||||| ||| ||||||| |  |||||||||||||||||||||||||||    
T  16870873 gattgattgcattgtacttctcccatcttttgattcttctgattgattgcatt 16870925  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 900
Target Start/End: Original strand, 16870994 - 16871043
Alignment:
Q  851 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 900  Q
    |||||||| || ||| ||| |||||| |||||||||||||||||||||||    
T  16870994 ttgcacttttcccctattggttcttccgattgattgcattgcacttctcc 16871043  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 863 - 900
Target Start/End: Original strand, 26403160 - 26403197
Alignment:
Q  863 ccttttgattcttctgattgattgcattgcacttctcc 900  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  26403160 ccttttgattcttttgattgattgcattgcacttctcc 26403197  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 35752430 - 35752377
Alignment:
Q  96 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 149  Q
    ||||||||||||||  |||| ||| |||||| |||| |||||||||||||||||    
T  35752430 caaaccttttaatcacaaccattgattttatttttgccacatgtcatacatcta 35752377  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 840 - 890
Target Start/End: Complemental strand, 46963763 - 46963711
Alignment:
Q  840 gattgattgctttgcacttctcac--cttttgattcttctgattgattgcatt 890  Q
    |||||||||| ||| ||||||| |  |||||||||||||||||||||||||||    
T  46963763 gattgattgcattgtacttctcccatcttttgattcttctgattgattgcatt 46963711  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 900
Target Start/End: Complemental strand, 46963790 - 46963741
Alignment:
Q  851 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 900  Q
    ||||||||||| ||| ||| |||||| |||||||||||||| ||||||||    
T  46963790 ttgcacttctcccctattggttcttccgattgattgcattgtacttctcc 46963741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 46964363 - 46964298
Alignment:
Q  203 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 268  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  46964363 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 46964298  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 720
Target Start/End: Original strand, 50295310 - 50295375
Alignment:
Q  655 tgtgtttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgt 720  Q
    |||||||||||||| ||||||||||||| |||| |||||| || | |||||||| ||||| |||||    
T  50295310 tgtgtttgtgtttgattaattggttgtttgtctatgtctgtctatggttgctttggttcagcttgt 50295375  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 851 - 896
Target Start/End: Original strand, 42530833 - 42530879
Alignment:
Q  851 ttgcacttct-caccttttgattcttctgattgattgcattgcactt 896  Q
    |||||||||| | |||||||||||||||||||||||||||| |||||    
T  42530833 ttgcacttcttccccttttgattcttctgattgattgcatttcactt 42530879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 866 - 900
Target Start/End: Original strand, 50295873 - 50295907
Alignment:
Q  866 tttgattcttctgattgattgcattgcacttctcc 900  Q
    |||||||||| ||||||||||||||||||||||||    
T  50295873 tttgattcttttgattgattgcattgcacttctcc 50295907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 3582072 - 3582138
Alignment:
Q  121 ttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatgga 187  Q
    |||||| ||| |||||||||||||||||||||| | |||  ||| |||| |||||||||| ||||||    
T  3582072 ttttatttttctcacatgtcatacatctaaaaaatagacatggataaatagaggcttcctaaatgga 3582138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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