View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_low_10 (Length: 476)
Name: NF15940_low_10
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Complemental strand, 28762595 - 28762149
Alignment:
| Q |
11 |
tcgaagaatatcagaattgagaaactggaccaattgagtcggacacaactcaaacagtcaaagcatcactagcctcaaccgatgtctgccaaagcataat |
110 |
Q |
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| T |
28762595 |
tcgacgaatatcagaattgagaaactggaccaattgagtcggacacaactcaaacagtcaaagcatcactagcctcaaccgatgtctgccaaagcataat |
28762496 |
T |
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| Q |
111 |
tatatgctttgcttaagggacacatagctaagtcatgatatgccagtaaataatgaagctcaacaatttcaatggacagagagatgacaaaaaacaacta |
210 |
Q |
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| T |
28762495 |
tatatgctttgcttaagggacacatagctaagtcatgatatgccagtaaataatgaagctcaacaatttcaatggacagagagatgacaaaaaacaacta |
28762396 |
T |
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| Q |
211 |
aagctgcgagtaagaaggttagtttcatttaatcaaactacttcttcctgtaaatgcatacaaaatgaacatagccacacacaaatttcaggaagataca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28762395 |
aagctgcgagtaagaaggttagtttcatttaatcaaactacttcttcctgtaaatgcatacaaaatgaacatagccacacacaaatttcaggaagataca |
28762296 |
T |
|
| Q |
311 |
acggagaatttcaaatcacattgaggtgatagtagatccttgattgtataatatataaagatacaagtacagcggcgaatttcaattttcaggaagaaca |
410 |
Q |
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| T |
28762295 |
acggcaaatttcaaatcacattgaggtgatagtagatccttgattgtataatatataaagatacaagtacaacggcgaatttcaattttcaggaagaaca |
28762196 |
T |
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| Q |
411 |
cttacgtcaaatttaaaggcacaacggcaaattgtcaatgaagcata |
457 |
Q |
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| T |
28762195 |
cttacgtcaaatttaaaggcacaacggcaaattgtcaatgaagcata |
28762149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 42798970 - 42798911
Alignment:
| Q |
19 |
tatcagaattgagaaactggaccaattgagtcggacacaactcaaacagtcaaagcatca |
78 |
Q |
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||||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||||| |
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| T |
42798970 |
tatcagaattgagcaactggaccaactgagtcagacacaactcaaacaatcaaagcatca |
42798911 |
T |
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