View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_low_11 (Length: 472)
Name: NF15940_low_11
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 130 - 456
Target Start/End: Original strand, 31569576 - 31569902
Alignment:
| Q |
130 |
tgaacagtaaatatattggataatttaagctgtcaaaataatatttttgaaaaataaagtagagatattttccatnnnnnnntaagatggagatcttaga |
229 |
Q |
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| T |
31569576 |
tgaacagtaaatatattggataatttaagctgtcaaaataatatttttgaaaaataaagtagagatattttccataaaaaaataagatggagatcttagg |
31569675 |
T |
|
| Q |
230 |
gcaggaactgaatctgaatgtcaaaattgagtactgacaacacatattcacatttaaccagcccatgttccttgacagtaaatataggacaagattttca |
329 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31569676 |
gcaggaactgaatctgaatgtcaaaattgactactgacaacacatattcacatttaaccagcccatgttccttgacagtaaatataggacaagattttca |
31569775 |
T |
|
| Q |
330 |
gatttatttttgctgaatttgttccaacatgaatcctctaaaacttccatctctccctcataaattaagatgaccttaaattgaaaacatggtaacaaaa |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31569776 |
gatttatttttgctgaatttgttccaacatgaatcctctaaaacttccatctctccctcataaattaagatgaccttaaattgaaaacatggtaacaaaa |
31569875 |
T |
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| Q |
430 |
tgagaataaaataataaacgaggtgtc |
456 |
Q |
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| T |
31569876 |
tgagaataaaataataaacgaggtgtc |
31569902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 31569456 - 31569541
Alignment:
| Q |
12 |
tgtggagaaaaatgatgagtgggtaataagaaatgtatatcnnnnnnnnggttactaatttacaaatgtattttaatcaaatggag |
97 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
31569456 |
tgtggagaaaaatgatgagtgagtaataagaaatgtatattttctttttggttgctaatttacaaatgtattttaatcaaatggag |
31569541 |
T |
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