View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15940_low_12 (Length: 456)

Name: NF15940_low_12
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15940_low_12
NF15940_low_12
[»] chr7 (11 HSPs)
chr7 (330-439)||(859386-859495)
chr7 (330-439)||(1220663-1220772)
chr7 (330-439)||(1217390-1217499)
chr7 (330-444)||(13886412-13886526)
chr7 (330-444)||(13882910-13883022)
chr7 (338-444)||(4300314-4300420)
chr7 (330-375)||(4888947-4888992)
chr7 (338-375)||(4303215-4303252)
chr7 (330-367)||(29175573-29175610)
chr7 (338-374)||(1883298-1883334)
chr7 (330-374)||(30217608-30217652)
[»] chr2 (12 HSPs)
chr2 (329-444)||(15129167-15129282)
chr2 (338-444)||(27952550-27952656)
chr2 (338-444)||(27956386-27956492)
chr2 (338-440)||(31636093-31636195)
chr2 (330-444)||(33655376-33655490)
chr2 (330-439)||(22011182-22011291)
chr2 (360-439)||(31633884-31633963)
chr2 (329-444)||(22264185-22264299)
chr2 (330-444)||(35682004-35682117)
chr2 (378-439)||(2155765-2155826)
chr2 (392-440)||(8781323-8781371)
chr2 (378-439)||(2165721-2165782)
[»] chr3 (9 HSPs)
chr3 (330-444)||(43304183-43304297)
chr3 (330-439)||(43306902-43307011)
chr3 (330-444)||(53012778-53012890)
chr3 (337-431)||(3069113-3069207)
chr3 (330-444)||(3063962-3064078)
chr3 (330-374)||(365846-365890)
chr3 (378-432)||(45168530-45168584)
chr3 (343-374)||(2472952-2472983)
chr3 (379-418)||(19795067-19795106)
[»] chr8 (11 HSPs)
chr8 (333-444)||(42891896-42892007)
chr8 (330-444)||(22512273-22512387)
chr8 (348-444)||(23573351-23573447)
chr8 (348-440)||(23570355-23570447)
chr8 (372-444)||(18468508-18468580)
chr8 (355-436)||(6845112-6845193)
chr8 (343-431)||(37189630-37189717)
chr8 (378-444)||(22922076-22922142)
chr8 (343-431)||(18180926-18181013)
chr8 (330-375)||(24730821-24730866)
chr8 (355-416)||(42890182-42890243)
[»] chr1 (7 HSPs)
chr1 (330-444)||(50857670-50857783)
chr1 (330-437)||(13444217-13444324)
chr1 (330-398)||(13441860-13441928)
chr1 (392-444)||(42071546-42071598)
chr1 (378-439)||(8931022-8931083)
chr1 (330-374)||(31915338-31915382)
chr1 (343-374)||(43681261-43681292)
[»] chr4 (7 HSPs)
chr4 (333-444)||(22691060-22691171)
chr4 (343-441)||(22988694-22988792)
chr4 (343-439)||(22716425-22716521)
chr4 (348-438)||(6659561-6659651)
chr4 (329-444)||(24667430-24667551)
chr4 (343-440)||(13085321-13085417)
chr4 (339-432)||(19935267-19935359)
[»] chr5 (5 HSPs)
chr5 (330-444)||(21849196-21849310)
chr5 (348-439)||(40779017-40779108)
chr5 (330-432)||(21857122-21857224)
chr5 (330-432)||(21845127-21845229)
chr5 (372-439)||(19501180-19501247)
[»] chr6 (6 HSPs)
chr6 (338-418)||(29341043-29341123)
chr6 (343-436)||(11194429-11194521)
chr6 (330-444)||(18726883-18726995)
chr6 (350-415)||(18203253-18203318)
chr6 (338-374)||(8050125-8050161)
chr6 (386-434)||(11190305-11190353)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 330 - 439
Target Start/End: Complemental strand, 859495 - 859386
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  859495 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 859396  T
Q  430 ttcggcccac 439  Q
    ||||||||||    
T  859395 ttcggcccac 859386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 330 - 439
Target Start/End: Complemental strand, 1220772 - 1220663
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  1220772 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 1220673  T
Q  430 ttcggcccac 439  Q
    ||||||||||    
T  1220672 ttcggcccac 1220663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 330 - 439
Target Start/End: Complemental strand, 1217499 - 1217390
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  1217499 tgatgcaggagggttttattagtaattcagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 1217400  T
Q  430 ttcggcccac 439  Q
    ||||||||||    
T  1217399 ttcggcccac 1217390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 330 - 444
Target Start/End: Complemental strand, 13886526 - 13886412
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||| ||||| |||||| |||||||||||||    
T  13886526 tgatgcagaagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttctagaactctctattattattacgttttattttat 13886427  T
Q  430 ttcggcccacaggtt 444  Q
    || ||||||| ||||    
T  13886426 tttggcccacgggtt 13886412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 330 - 444
Target Start/End: Complemental strand, 13883022 - 13882910
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||  ||||| |||||| |||||||||||||    
T  13883022 tgatgcaggagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttctagaac--tctattattattacgttttattttat 13882925  T
Q  430 ttcggcccacaggtt 444  Q
    || ||||||| ||||    
T  13882924 tttggcccacgggtt 13882910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 338 - 444
Target Start/End: Original strand, 4300314 - 4300420
Alignment:
Q  338 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 437  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||| ||||| |||||| ||||||||||||||| |||||    
T  4300314 gagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctaaaactctctattattattacgttttattttattttggccc 4300413  T
Q  438 acaggtt 444  Q
    || ||||    
T  4300414 acgggtt 4300420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 4888992 - 4888947
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattattta 375  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  4888992 tgatgcaggagaattttattagtaatttagtagtatttattattta 4888947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 4303215 - 4303252
Alignment:
Q  338 gaggattttattagtaatttagtagtatttattattta 375  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4303215 gagggttttattagtaatttagtagtatttattattta 4303252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 29175573 - 29175610
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtattt 367  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  29175573 tgatgcaggagggttttattagtaatttagtagtattt 29175610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 1883298 - 1883334
Alignment:
Q  338 gaggattttattagtaatttagtagtatttattattt 374  Q
    |||| |||||||||||| |||||||||||||||||||    
T  1883298 gagggttttattagtaacttagtagtatttattattt 1883334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 30217608 - 30217652
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattattt 374  Q
    ||||||| |||| |||||| | |||||||||||||||||||||||    
T  30217608 tgatgcaagagggttttataactaatttagtagtatttattattt 30217652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 329 - 444
Target Start/End: Original strand, 15129167 - 15129282
Alignment:
Q  329 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttatttta 428  Q
    |||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  15129167 atgatgcaggagggttttattaataatttagtagtatttattatttaaccaaatcttagtaattttctagaacttcctattattatttcgttttatttta 15129266  T
Q  429 tttcggcccacaggtt 444  Q
    ||||||||||| ||||    
T  15129267 tttcggcccacgggtt 15129282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 338 - 444
Target Start/End: Complemental strand, 27952656 - 27952550
Alignment:
Q  338 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 437  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  27952656 gagggttttattaataatttagtagtatttattatttatccaaatcttagtaattttctagaactttctattattatttcgttttattttattttggccc 27952557  T
Q  438 acaggtt 444  Q
    || ||||    
T  27952556 acgggtt 27952550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 338 - 444
Target Start/End: Complemental strand, 27956492 - 27956386
Alignment:
Q  338 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 437  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||    
T  27956492 gagggttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctagaactttctattattatttcgttttattttattttagccc 27956393  T
Q  438 acaggtt 444  Q
    || ||||    
T  27956392 acgggtt 27956386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 338 - 440
Target Start/End: Original strand, 31636093 - 31636195
Alignment:
Q  338 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 437  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  31636093 gagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttattttggccc 31636192  T
Q  438 aca 440  Q
    |||    
T  31636193 aca 31636195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 330 - 444
Target Start/End: Original strand, 33655376 - 33655490
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  33655376 tgatgcaggagggttttattggtaatttagtagtatctattatttagccaaatcttagtaattttctagaactttctattattattttgttttattttat 33655475  T
Q  430 ttcggcccacaggtt 444  Q
    |||||||||| ||||    
T  33655476 ttcggcccacgggtt 33655490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 330 - 439
Target Start/End: Original strand, 22011182 - 22011291
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||| ||||||   |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  22011182 tgatgcaggagggttttatctttaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 22011281  T
Q  430 ttcggcccac 439  Q
    || |||||||    
T  22011282 tttggcccac 22011291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 360 - 439
Target Start/End: Original strand, 31633884 - 31633963
Alignment:
Q  360 tagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 439  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  31633884 tagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcattttattttatttcggcccac 31633963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 329 - 444
Target Start/End: Original strand, 22264185 - 22264299
Alignment:
Q  329 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttatttta 428  Q
    ||||||||  |||||||| ||||||||||||||||||||  | |||| ||||||||||||||||||||| |||||||||| ||||||| ||||| |||||    
T  22264185 atgatgcagaaggattttcttagtaatttagtagtattttat-tttagccaaatcttagtaattttctagaactttctattattattttgttttgtttta 22264283  T
Q  429 tttcggcccacaggtt 444  Q
    ||||||| ||| ||||    
T  22264284 tttcggctcacgggtt 22264299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 330 - 444
Target Start/End: Original strand, 35682004 - 35682117
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||| |||| ||||||||||  ||||||||  | |||| ||||||||||||||||||||| ||||||||||  |||||||||||| ||||||    
T  35682004 tgatgcaggagggttttcttagtaattttatagtattttat-tttagccaaatcttagtaattttctagaactttctattgttatttcgttttgttttat 35682102  T
Q  430 ttcggcccacaggtt 444  Q
    || | ||||||||||    
T  35682103 ttggacccacaggtt 35682117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 2155765 - 2155826
Alignment:
Q  378 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 439  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||| |||||||    
T  2155765 caaatcttagtgattttctagaactttctattattattttgttttgttttattttggcccac 2155826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 8781323 - 8781371
Alignment:
Q  392 tttctataactttctatgattatttcgttttattttatttcggcccaca 440  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||||    
T  8781323 tttctagaactttctattattatttcgttttgttttatttcggcccaca 8781371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 2165721 - 2165782
Alignment:
Q  378 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 439  Q
    ||||||||||| ||||| || |||||| ||| ||||||| ||||| |||||||| |||||||    
T  2165721 caaatcttagtgattttttagaactttgtattattattttgttttgttttattttggcccac 2165782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 330 - 444
Target Start/End: Complemental strand, 43304297 - 43304183
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  43304297 tgatgcaggagggttttattagtaatttagtagcatttattatttagccaaatcttagtaattttctataactttctattagtatttcgttttattttat 43304198  T
Q  430 ttcggcccacaggtt 444  Q
    || ||||||| ||||    
T  43304197 tttggcccacgggtt 43304183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 330 - 439
Target Start/End: Complemental strand, 43307011 - 43306902
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  43307011 tgatgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttctagaacattctattattatttcgttttattttat 43306912  T
Q  430 ttcggcccac 439  Q
    || |||||||    
T  43306911 tttggcccac 43306902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 330 - 444
Target Start/End: Original strand, 53012778 - 53012890
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||  ||||| ||||||  ||||||||||||    
T  53012778 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaac--tctattattattatgttttattttat 53012875  T
Q  430 ttcggcccacaggtt 444  Q
    ||  |||||| ||||    
T  53012876 tttagcccacgggtt 53012890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 337 - 431
Target Start/End: Complemental strand, 3069207 - 3069113
Alignment:
Q  337 cgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 431  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||  |||| |||||| |||||||||||||||    
T  3069207 cgagggttttattagtaatttagtagtatttattatttagccaaatctttgtaattctctagaactcactattattattacgttttattttattt 3069113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 330 - 444
Target Start/End: Complemental strand, 3064078 - 3063962
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgat--tatttcgttttatttt 427  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||   ||| ||  |||| |||||||||||    
T  3064078 tgatgcaggagggttttgttagtaatttagtagtatttattatttagccaaatcttagtaattctctagaactcgttattattatattacgttttatttt 3063979  T
Q  428 atttcggcccacaggtt 444  Q
    |||| ||||||| ||||    
T  3063978 attttggcccacgggtt 3063962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 365890 - 365846
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattattt 374  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  365890 tgatgcaggaggattttattagtaatttagtagtatttattattt 365846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 45168584 - 45168530
Alignment:
Q  378 caaatcttagtaattttctataactttctatgattatttcgttttattttatttc 432  Q
    ||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  45168584 caaattttagtaattttctaaaaccttctattattatttcgttttattttatttc 45168530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 374
Target Start/End: Complemental strand, 2472983 - 2472952
Alignment:
Q  343 ttttattagtaatttagtagtatttattattt 374  Q
    ||||||||||||||||||||||||||||||||    
T  2472983 ttttattagtaatttagtagtatttattattt 2472952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 418
Target Start/End: Original strand, 19795067 - 19795106
Alignment:
Q  379 aaatcttagtaattttctataactttctatgattatttcg 418  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  19795067 aaatcttagtaattttctagaactttctattattatttcg 19795106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 333 - 444
Target Start/End: Complemental strand, 42892007 - 42891896
Alignment:
Q  333 tgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 432  Q
    |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||     
T  42892007 tgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttctagaactttctattattatttcgttttattttatttt 42891908  T
Q  433 ggcccacaggtt 444  Q
     |||||| ||||    
T  42891907 agcccacgggtt 42891896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 330 - 444
Target Start/End: Complemental strand, 22512387 - 22512273
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||| |||||||||||| |||||||    
T  22512387 tgatgcaggagagttttattagtaatttagtagtatttattatttagctaaatcttagtaattttctagaactttatattattatttcgtttcattttat 22512288  T
Q  430 ttcggcccacaggtt 444  Q
    |||||||||||||||    
T  22512287 ttcggcccacaggtt 22512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 348 - 444
Target Start/End: Original strand, 23573351 - 23573447
Alignment:
Q  348 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacaggtt 444  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||    
T  23573351 ttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttatttcgttttattttatttcggctcacaggtt 23573447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 348 - 440
Target Start/End: Original strand, 23570355 - 23570447
Alignment:
Q  348 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccaca 440  Q
    ||||||||||  ||||||||||||||||  |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||    
T  23570355 ttagtaattttatagtatttattatttaatcaaatcttagtaattttctagaactttctatttttatttcgttttattttatttcgacccaca 23570447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 18468508 - 18468580
Alignment:
Q  372 tttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacaggtt 444  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| ||||||| ||||    
T  18468508 tttaaccaaatcttagtaattttctagaactttctattattatttcgttttgttttattttggcccacgggtt 18468580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 355 - 436
Target Start/End: Original strand, 6845112 - 6845193
Alignment:
Q  355 tttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcc 436  Q
    |||| ||||||||||||||||  |||||||||||||||||||| |||| ||||| |||||| ||||| ||||||||| ||||    
T  6845112 tttattagtatttattatttagtcaaatcttagtaattttctaaaactctctattattattacgtttgattttattttggcc 6845193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 431
Target Start/End: Original strand, 37189630 - 37189717
Alignment:
Q  343 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 431  Q
    |||| ||||||||||||||||||||  | |||| |||||||||||||| ||| || |||||| ||| ||||||| ||||||||||||||    
T  37189630 ttttcttagtaatttagtagtattttat-tttagccaaatcttagtaactttttagaactttatattattattttgttttattttattt 37189717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 444
Target Start/End: Complemental strand, 22922142 - 22922076
Alignment:
Q  378 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacaggtt 444  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||| ||||||| ||||    
T  22922142 caaatcttagtgattttctagaactttctattattattttgttttgttttattttggcccacgggtt 22922076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 431
Target Start/End: Complemental strand, 18181013 - 18180926
Alignment:
Q  343 ttttattagtaatttagtagtatttattatttatc-caaatcttagtaattttctataactttctatgattatttcgttttattttattt 431  Q
    |||| ||||||||||||||||||||  |||||| | ||||||||| ||||||| || || |||||||  |||||||||||| ||||||||    
T  18181013 ttttcttagtaatttagtagtattt--tatttaactcaaatcttaataattttttagaaatttctattcttatttcgttttgttttattt 18180926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 24730821 - 24730866
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattattta 375  Q
    ||||||| |||| ||||||||||||||||||||||||||| |||||    
T  24730821 tgatgcaggagggttttattagtaatttagtagtatttatgattta 24730866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 42890182 - 42890243
Alignment:
Q  355 tttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattattt 416  Q
    |||| |||||| ||||||||| ||||||   |||||||||||| |||||||||| |||||||    
T  42890182 tttattagtatctattatttagccaaatggaagtaattttctagaactttctattattattt 42890243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 330 - 444
Target Start/End: Complemental strand, 50857783 - 50857670
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  50857783 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttgttttat 50857684  T
Q  430 ttcggcccacaggtt 444  Q
    || ||||||| ||||    
T  50857683 tt-ggcccacgggtt 50857670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 13444324 - 13444217
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | || ||||||| ||||||||||||||||||||    
T  13444324 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaattttagtaattttcaagaattttctattattatttcgttttattttat 13444225  T
Q  430 ttcggccc 437  Q
    || |||||    
T  13444224 tttggccc 13444217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 398
Target Start/End: Complemental strand, 13441928 - 13441860
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctat 398  Q
    |||||||  ||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  13441928 tgatgcagaagggttttgttagtaatttagtagtatttattatttagccaaatcatagtaattttctat 13441860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 42071598 - 42071546
Alignment:
Q  392 tttctataactttctatgattatttcgttttattttatttcggcccacaggtt 444  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||| |||||    
T  42071598 tttctagaactttctattattatttcgttttattttatttcggcccaaaggtt 42071546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 8931022 - 8931083
Alignment:
Q  378 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 439  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||| |||||||    
T  8931022 caaatcttagtgattttctagaactttctattattattttgttttgttttattttggcccac 8931083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 31915338 - 31915382
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattattt 374  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||    
T  31915338 tgatgcatgagggttttattagtaatttagtagtatttattattt 31915382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 374
Target Start/End: Original strand, 43681261 - 43681292
Alignment:
Q  343 ttttattagtaatttagtagtatttattattt 374  Q
    ||||||||||||||||||||||||||||||||    
T  43681261 ttttattagtaatttagtagtatttattattt 43681292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 333 - 444
Target Start/End: Original strand, 22691060 - 22691171
Alignment:
Q  333 tgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 432  Q
    |||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  22691060 tgcaggagggttttattaataatttagtagtatttattatttagccaaatcttagtaattttctagaactttgtattattatttcgttttattttatttc 22691159  T
Q  433 ggcccacaggtt 444  Q
     |||||| ||||    
T  22691160 agcccactggtt 22691171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 343 - 441
Target Start/End: Complemental strand, 22988792 - 22988694
Alignment:
Q  343 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacag 441  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||||||| ||||||||    
T  22988792 ttttattagtaatttaatagtatttattatttagccaaatcttaataattttctagaactttctattattatttctttttattttatttcagcccacag 22988694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 343 - 439
Target Start/End: Original strand, 22716425 - 22716521
Alignment:
Q  343 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 439  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||||||| ||||||    
T  22716425 ttttattagtaatttaatagtatttattatttagccaaatcttaataattttctagaactttctattattatttctttttattttatttcagcccac 22716521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 348 - 438
Target Start/End: Complemental strand, 6659651 - 6659561
Alignment:
Q  348 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccca 438  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  6659651 ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattattattttgttttattttatttcggccca 6659561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 329 - 444
Target Start/End: Original strand, 24667430 - 24667551
Alignment:
Q  329 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttcta-taa-----ctttctatgattatttcgtttt 422  Q
    |||||||| ||||  ||||||| ||||||||||||| |||||||||| ||||||| |||||||||| || |||     |||||||| |||||||| ||||    
T  24667430 atgatgcaggagggctttattattaatttagtagtagttattatttagccaaatcgtagtaattttttagtaattcatctttctattattatttcatttt 24667529  T
Q  423 attttatttcggcccacaggtt 444  Q
    |||||||||||| |||| ||||    
T  24667530 attttatttcggtccacgggtt 24667551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 440
Target Start/End: Complemental strand, 13085417 - 13085321
Alignment:
Q  343 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccaca 440  Q
    |||| ||||||||||  ||||||||  | |||| ||| ||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||| ||||    
T  13085417 tttttttagtaattttatagtattttat-tttagccacatcttagtaatattctagaactttctattattatttcgttttgttttatttcggctcaca 13085321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 432
Target Start/End: Original strand, 19935267 - 19935359
Alignment:
Q  339 aggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 432  Q
    |||||||| ||||||||||||||||||||  | ||||  ||||||||| | |||||  | |||||||||| ||||||||||||| |||||||||    
T  19935267 aggattttcttagtaatttagtagtattttat-tttagtcaaatcttaatcatttttcagaactttctattattatttcgttttgttttatttc 19935359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 330 - 444
Target Start/End: Complemental strand, 21849310 - 21849196
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    |||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21849310 tgatgcacgagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21849211  T
Q  430 ttcggcccacaggtt 444  Q
    |||||||||| ||||    
T  21849210 ttcggcccacgggtt 21849196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 348 - 439
Target Start/End: Complemental strand, 40779108 - 40779017
Alignment:
Q  348 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 439  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  40779108 ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttatttcggcccac 40779017  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 330 - 432
Target Start/End: Complemental strand, 21857224 - 21857122
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    |||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21857224 tgatgcacgagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21857125  T
Q  430 ttc 432  Q
    |||    
T  21857124 ttc 21857122  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 330 - 432
Target Start/End: Complemental strand, 21845229 - 21845127
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21845229 tgatgcaagagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21845130  T
Q  430 ttc 432  Q
    |||    
T  21845129 ttc 21845127  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 439
Target Start/End: Complemental strand, 19501247 - 19501180
Alignment:
Q  372 tttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 439  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||    
T  19501247 tttacccaaatcttagtaattttctaaaactttctattattattttgttttgttttatttcggcccac 19501180  T

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Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 338 - 418
Target Start/End: Complemental strand, 29341123 - 29341043
Alignment:
Q  338 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcg 418  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| |||||||||    
T  29341123 gagggttttattagtaatttagtagtatttattttttagccaaatcttagtaattttctaaaactttctattattatttcg 29341043  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 343 - 436
Target Start/End: Original strand, 11194429 - 11194521
Alignment:
Q  343 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcc 436  Q
    |||| ||||||||||||||||||||  | |||| ||||||||||||||||||||| |||||||||  ||||||| ||||| |||||||||||||    
T  11194429 ttttcttagtaatttagtagtattttat-tttagccaaatcttagtaattttctagaactttctagtattattttgttttgttttatttcggcc 11194521  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 444
Target Start/End: Original strand, 18726883 - 18726995
Alignment:
Q  330 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 429  Q
    ||||||| |||| |||| ||||||||||  |||| |||  | |||| |||||||||||| |||||||| |||||||||| ||||||||||||| ||||||    
T  18726883 tgatgcaggagggtttttttagtaattttatagttttttat-tttagccaaatcttagtcattttctagaactttctattattatttcgtttt-ttttat 18726980  T
Q  430 ttcggcccacaggtt 444  Q
    |||||||||| ||||    
T  18726981 ttcggcccacgggtt 18726995  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 415
Target Start/End: Original strand, 18203253 - 18203318
Alignment:
Q  350 agtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatt 415  Q
    ||||||||  ||||||||||||||||  |||||||||||||||||||| |||| ||||| ||||||    
T  18203253 agtaattttatagtatttattatttagtcaaatcttagtaattttctagaactctctattattatt 18203318  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 8050161 - 8050125
Alignment:
Q  338 gaggattttattagtaatttagtagtatttattattt 374  Q
    |||| |||| |||||||||||||||||||||||||||    
T  8050161 gaggtttttcttagtaatttagtagtatttattattt 8050125  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Original strand, 11190305 - 11190353
Alignment:
Q  386 agtaattttctataactttctatgattatttcgttttattttatttcgg 434  Q
    |||||||||||| |||||||||| ||||| | ||||| |||||||||||    
T  11190305 agtaattttctagaactttctattattatattgttttgttttatttcgg 11190353  T

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