View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_low_13 (Length: 447)
Name: NF15940_low_13
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 32318260 - 32317851
Alignment:
| Q |
19 |
actcgtttgtttggccaataagttaaccaaatccaacctcttatctcccactccattgttttcccaatagctcctttatccactttccaccacactcttt |
118 |
Q |
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| T |
32318260 |
actcgtttgtttggccaataagttaaccaaatccaacctcttatctcccactccattgttttcccaatagctcctttatccactttccaccacactcttt |
32318161 |
T |
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| Q |
119 |
caccatattcatcacccgcaaaaataaccccaccttgtctagtaaaaggtctataagcactagagtaacgatttttaaaccatgactttggattaatcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32318160 |
caccatattcatcacccgcaaaaataaccccaccttgtctagtaaaaggtctataagcactagagtaacgatttttaaaccatgactttggattaatcaa |
32318061 |
T |
|
| Q |
219 |
tgcacatttagaaggcttggatgaaaacacttctttgccatccatactatcatgaagaaaccaattcaaatttgcactatagccataaacagattgttca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32318060 |
tgcacatttagaaggcttggatgaaaacacttctttgccatccatactatcatgaagaaaccaattcaaatttgcactatagccataaacagattgttca |
32317961 |
T |
|
| Q |
319 |
aatttccatggctttaaactaacggttgttgattctccggctgatactttgagtcctaaaggatttggtggctcaattgaagcttctatacctttgtcaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32317960 |
aatttccatggctttaaactaacggttgttgattctccggctgatactttgagtcctaaaggatttggtggctcaattgaagcttctatacctttgtcaa |
32317861 |
T |
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| Q |
419 |
taccaatttc |
428 |
Q |
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| T |
32317860 |
taccaatttc |
32317851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 35 - 376
Target Start/End: Complemental strand, 36043006 - 36042665
Alignment:
| Q |
35 |
aataagttaaccaaatccaacctcttatctcccactccattgttttcccaatagctcctttatccactttccaccacactctttcaccatattcatcacc |
134 |
Q |
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||||||||||||| |||||||| || || ||||| ||||| | ||||| |||| | |||||| |||||||| ||||| ||||| |||||||||||||| |
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| T |
36043006 |
aataagttaaccatatccaacccctaatttcccattccataatcttccctctagcacttttatcaactttccaacacacactttctccatattcatcacc |
36042907 |
T |
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| Q |
135 |
cgcaaaaataaccccaccttgtctagtaaaaggtctataagcactagagtaacgatttttaaaccatgactttggattaatcaatgcacatttagaaggc |
234 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||| || || | || | ||||||| ||||| || ||||| ||| || |||| |||||| |
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| T |
36042906 |
agcaaaaataaccccaccttgtctagtaaaaggacgataagcacttgaatacctatctctaaaccaagacttagggttaattaattcaaattttgaaggc |
36042807 |
T |
|
| Q |
235 |
ttggatgaaaacacttctttgccatccatactatcatgaagaaaccaattcaaatttgcactatagccataaacagattgttcaaatttccatggcttta |
334 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||| |
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| T |
36042806 |
tttgttgaaaacacttctttgccatccatactatcatgaagaaaccaattcaaatttgcactataaccataaaccgattcttcgaatttccatggcttta |
36042707 |
T |
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| Q |
335 |
aactaacggttgttgattctccggctgatactttgagtccta |
376 |
Q |
| |
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|||| | ||||| |||||||| |||||||| |||||||||| |
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| T |
36042706 |
aactcatcgttgtggattctccagctgatacgttgagtccta |
36042665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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