View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_low_14 (Length: 437)
Name: NF15940_low_14
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 5173934 - 5173509
Alignment:
| Q |
1 |
cttacaacataacataggtcctaggtttcaatccagctctgagaatgcagcagcgttaaaactcttaatggagagttgtatcaccctcgtgactctattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173934 |
cttacaacataacataggtcctaggtttcaatccagctctgagaatgcagcagcgttaaaactcttaatggagagttgtatcaccctcgtgactctattt |
5173835 |
T |
|
| Q |
101 |
aactcgagggattagtctatatagttgcacgtgaaggatatccgatttacaacgataaataattatgtgcataggcttttgacatgttgttacttgtcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173834 |
aactcgagggattagtctatatagttgcacgtgaaggatatccgatttacaacgataaataattatgtgcataggcttttgacatgttgttacttgtcat |
5173735 |
T |
|
| Q |
201 |
tatcctatagctaaaaatgctgctttcaaatttaagtttataaatgatctacaattgaagttcaaaaggttcgtcatcc-aaatttagtgacacaattga |
299 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5173734 |
tatcctatagctaaaaatgctgctttcaaatttaagtttataaatgatctacaattgaagttcaaaaggttcgtcatccaaaatttagtgacacaattga |
5173635 |
T |
|
| Q |
300 |
gacatcaaatctatttttatcattagaaatctaactcaataacccggaatttgcaaacatggtagcacaagcaactgataatggaatccgtagccgaaag |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173634 |
gacatcaaatctatttttatcattagaaatctaactcaataacccggaatttgcaaacatggtagcacaagcaactgataatggaatccgtagccgaaag |
5173535 |
T |
|
| Q |
400 |
aaatcatcaagaggtcaccacaggtt |
425 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5173534 |
aaatcatcaagaggtcaccacaggtt |
5173509 |
T |
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