View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15940_low_15 (Length: 436)
Name: NF15940_low_15
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 167 - 430
Target Start/End: Original strand, 46678775 - 46679038
Alignment:
| Q |
167 |
tatttaacattcccaattatggagttctattcaagtgttatggccaaatcaannnnnnnnaataacatataactattttataaagataatgacatagatt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46678775 |
tatttaacattcccaattatggagttctattcaagtgttatggccaaatcaattctttttaataacatataactattttataaagataacgacatagatt |
46678874 |
T |
|
| Q |
267 |
tcacccaacagaatatagaaacaattgttatggccgaatgnnnnnnnnttacaagctcaaagtaaaatttccgtgggaaaagtgtgagaaagcaaaagtg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46678875 |
tcacccaacagaatatagaaacaattgttatggccgaataaaaaaaaattacaagctcaaagtaaaatttccgtgggaaaagtgtgagaaagcaaaagtg |
46678974 |
T |
|
| Q |
367 |
aaggttgtaaggtgactgtaattacctgtgtggaaactagctatagacaaagccgcctttgcta |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46678975 |
aaggttgtaaggtgactgtaattacctgtgtgggaactagctatagacaaagccgcctttgcta |
46679038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 46678546 - 46678686
Alignment:
| Q |
19 |
actgacaacataacaaaatcttctttaagttggaataggaactcttgtgtaactgttaaaaaactaacaaacaaactcttctcgaataacgttaacaaac |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46678546 |
actgacaacataacaaactcttctttaagttggaataggaactcttgtgtaactgttaaaaaactaacaaacaaactcttctcgaataacgttaacaaac |
46678645 |
T |
|
| Q |
119 |
aaacttaatcttactaataacatatattctggtgattcagc |
159 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46678646 |
aaacttaatcttactaataacacatattctggtgattcagc |
46678686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University