View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_low_18 (Length: 386)
Name: NF15940_low_18
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_low_18 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 22 - 370
Target Start/End: Original strand, 193284 - 193635
Alignment:
| Q |
22 |
tttatagtgtgggacaatgttgatcttgttactcatgaagttatgggtggattaaagaatgtatatgcaattggagcaggtaaaatatagttgac---gt |
118 |
Q |
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| T |
193284 |
tttatagtgtgggacaatgttgatcttgttactcatgaagttatgggtggattaaagaatgtatatgctattggagcaggtaaaatatagttgacattgt |
193383 |
T |
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| Q |
119 |
taaattataaagaacagctaagaagaagctcataagagcatacttttttagcaagagagtaaacgaagataattttgcattgttcttgataatcgattga |
218 |
Q |
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| T |
193384 |
taaattatagagaacagctaagaagaagctcataagagcatgcttttttagcaagagagtaaacgaagataattttgcattgttcttgataatcgattga |
193483 |
T |
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| Q |
219 |
ctcatagaacctgtcttatttgatataattgcagttgaaatttcatttaagaggacacctacattcaattgttgtttatacacttacaattatttgctgt |
318 |
Q |
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| T |
193484 |
ctcatagaacctgtcttatttgatataattgcagttgaaatttcatttaagaggacacctacattcaattgttgtttatacacttacaattatttgctgt |
193583 |
T |
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| Q |
319 |
ttttaaacttatgtacaaatctagcttattatattttgttttgccagatatt |
370 |
Q |
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| T |
193584 |
ttttaaacatatgtacaaatctagcttattatattttgttttgccagatatt |
193635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 22 - 370
Target Start/End: Complemental strand, 14624099 - 14623748
Alignment:
| Q |
22 |
tttatagtgtgggacaatgttgatcttgttactcatgaagttatgggtggattaaagaatgtatatgcaattggagcaggtaaaatatagttgac---gt |
118 |
Q |
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| T |
14624099 |
tttatagtgtgggacaatgttgatcttgttactcatgaagttatgggtggattaaagaatgtatatgctattggagcaggtaaaatatagttgacattgt |
14624000 |
T |
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| Q |
119 |
taaattataaagaacagctaagaagaagctcataagagcatacttttttagcaagagagtaaacgaagataattttgcattgttcttgataatcgattga |
218 |
Q |
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| T |
14623999 |
taaattatagagaacagctaagaagaagctcataagagcatgcttttttagcaagagagtaaacgaagataattttgcattgttcttgataatcgattga |
14623900 |
T |
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| Q |
219 |
ctcatagaacctgtcttatttgatataattgcagttgaaatttcatttaagaggacacctacattcaattgttgtttatacacttacaattatttgctgt |
318 |
Q |
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| T |
14623899 |
ctcatagaacctgtcttatttgatataattgcagttgaaatttcatttaagaggacacctacattcaattgttgtttatacacttacaattatttgctgt |
14623800 |
T |
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| Q |
319 |
ttttaaacttatgtacaaatctagcttattatattttgttttgccagatatt |
370 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14623799 |
ttttaaacatatgtacaaatctagcttattatattttgttttgccagatatt |
14623748 |
T |
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