View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15940_low_19 (Length: 382)
Name: NF15940_low_19
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 37316802 - 37317157
Alignment:
| Q |
1 |
tctcattgcctaattgagtaatgtttcttaacttttagaagcatac-----aacaaaaggtttgtactttgtacataaatcatctattgcagctgggaag |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37316802 |
tctcattgcctaattgagtaatgtttcttaacttttagaagcatacaatacaacaaaaggtttgtactttgtacataaatcatctattgcagctgggaag |
37316901 |
T |
|
| Q |
96 |
tttttaccttgtgttattgcttcaatttgtaaacactaaagtacacactttatataattaaatatttattgtataaagttatcaccacaataatctttgt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
37316902 |
tttttaccttgtgttattgcttcaatttgtaaacactaatgtacacactttatataattaaatatttattttataatgttatcaccacaataatctttgt |
37317001 |
T |
|
| Q |
196 |
caaaaaataattaacacggtgtcatattatcagaacctccgtatggtaaaagattgctaggacatttga---------------tttaaatccgcaatta |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37317002 |
caaaaaataattaacacggtgtcatattatcagaacctccgtatggtaaaagattgctaggacatttgatatgataaatgtgagtttaaatccgcaatta |
37317101 |
T |
|
| Q |
281 |
caatcctcttagccttctagtttggggcttcacattggtttaatgcagtcaataag |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37317102 |
caatcctcttagccttctagtttggggcttcacattggtttaatgcagtcaataag |
37317157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University