View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_low_20 (Length: 350)
Name: NF15940_low_20
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_low_20 |
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| [»] scaffold0665 (1 HSPs) |
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| [»] scaffold0356 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 3 - 335
Target Start/End: Complemental strand, 15236317 - 15235985
Alignment:
| Q |
3 |
caaaggggataagccttattcatccaaggatatatctgcgaagttacaaaaagtatggaatgttagtgggcagtggaatatgccctcacttggccggggt |
102 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||||||| |||||||| |
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| T |
15236317 |
caaaggggacaagccttattcatccaaggatatatctgcgaagttacaaaaagtatggaatgttaatgggaagtggcatatgctctcacttagccggggt |
15236218 |
T |
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| Q |
103 |
tttataaattattatttgcttcacatgttgatatgtgtacagtttgggtagtaggtaccgtaaatttgaagtcgggtgtacttcgattgtttgaatggac |
202 |
Q |
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| T |
15236217 |
tttataaattattatttgcctcacatgttgatatgtgtacagtttggacagcaggtaccgtaaatttgaagctgggtgtacttcgattgtttgaatggac |
15236118 |
T |
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| Q |
203 |
aatggactttaatattcacacgcaaagacaaacccatacgcaagtttggatggaaaggactttatatgagattgctagggcggtcgggactccattattg |
302 |
Q |
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| T |
15236117 |
aagggactttaatattcacacgcaaagacaaacacatacgcaagtttggatggaaaggactttatatgagattgctggggcggtcgggactccattattg |
15236018 |
T |
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| Q |
303 |
attgacaatgtgacgaagaacagattatttggt |
335 |
Q |
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| T |
15236017 |
attgacaatgtgacgaagaacagattgtttggt |
15235985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 28014433 - 28014684
Alignment:
| Q |
3 |
caaaggggataagccttattcatccaaggatatatctgcgaagttacaaaaagtatggaatgttagtgggcagtggaatatgccctcacttggccgggg- |
101 |
Q |
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| T |
28014433 |
caaagggaacaagccttattcatccaaggatgtatttgcgaagttacagaaagtatggaaagttattgggcagtggcgtatgctctcacttggccgggga |
28014532 |
T |
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| Q |
102 |
ttttataaattattatttgcttcacatgttgatatgtgtacagtttgggtagtaggtaccgtaaatttgaagtcgggtgtacttcgattgtttgaatgga |
201 |
Q |
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| T |
28014533 |
ttttatgaatttttctttgatttacatgctgatatgcgcacagtttgggcagcgggtactgtaaatttgaagtcgggtgtacttcgattgtttgaataaa |
28014632 |
T |
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| Q |
202 |
caatggactttaatattcacacgcaaagacaaacccatacgcaagtttggat |
253 |
Q |
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| T |
28014633 |
caagggaatttaatatgcacacgcaaaggcaaacacatacgcaagtttggat |
28014684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 28014712 - 28014788
Alignment:
| Q |
248 |
ttggatggaaaggactttatatgagattgctagggcggtcgggactccattattgattgacaatgtgacgaagaaca |
324 |
Q |
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| T |
28014712 |
ttggatggaaatgactttatatcagattgttggggcggtcgggactccattattgattgacaatgtgacgaagaaca |
28014788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 26789430 - 26789364
Alignment:
| Q |
187 |
gattgtttgaatggacaatggactttaatattcacacgcaaagacaaacccatacgcaagtttggat |
253 |
Q |
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| T |
26789430 |
gattgtttgaatggacaaaggagttcaatatgcacacgcaaagacaaacacacactcaggtttggat |
26789364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0665 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 5687 - 5751
Alignment:
| Q |
249 |
tggatggaaaggactttatatgagattgctagggcggtcgggactccattattgattgacaatgt |
313 |
Q |
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| T |
5687 |
tggatggagaggactctatatgaaattgcgggtgcggtggggacgccattattgattgataatgt |
5751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 8309 - 8373
Alignment:
| Q |
249 |
tggatggaaaggactttatatgagattgctagggcggtcgggactccattattgattgacaatgt |
313 |
Q |
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| T |
8309 |
tggatggagaggactctatatgaaattgcgggtgcggtggggacgccattattgattgataatgt |
8373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 12158303 - 12158371
Alignment:
| Q |
248 |
ttggatggaaaggactttatatgagattgctagggcggtcgggactccattattgattgacaatgtgac |
316 |
Q |
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| T |
12158303 |
ttggatggagaggacattgtatgagattgctggggcggttggtactccgttactcattgataatgtgac |
12158371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 27505402 - 27505466
Alignment:
| Q |
165 |
aatttgaagtcgggtgtacttcgattgtttgaatggacaatggactttaatattcacacgcaaag |
229 |
Q |
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| T |
27505402 |
aatttgaagtcgggtgtgctttggttatttaaatggacgaaggattttaacattcacacgcaaag |
27505466 |
T |
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