View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_low_25 (Length: 293)
Name: NF15940_low_25
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 7785370 - 7785631
Alignment:
| Q |
1 |
aagttgagggtcatcgatctaacattattttgcaagtaatttgtgaggaagtttttcataattcgtattctaaaaaagtatcacttatgttatgtcaata |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
7785370 |
aagttcagggtcatcgatctaacattattttgcaagtaatttgtgaggaagtttttcataattcgtattctaaaaaaatatcacttgtgttatgtcaata |
7785469 |
T |
|
| Q |
101 |
tcagacttcaacttcttttggtgttgcattttaattaaattgacattgctatattttgaccaaacattattattaaatttatgtcgactagattatcaac |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7785470 |
tcagacttcaactttttttggtgttgcattttaattaaattgacattgctatattttgaccaaacattattattaaatttatgtcgactagattatcaac |
7785569 |
T |
|
| Q |
201 |
attannnnnnnnnagatatgttttcaagtattagcaacttgggtcttagttttaagaacact |
262 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7785570 |
attttttttttttagatatgttttcaagtattagcaacttgggtcttagttttaagaacact |
7785631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 7805293 - 7805552
Alignment:
| Q |
1 |
aagttgagggtcatcgatctaacattattttgcaagtaatttgtgaggaagtttttcataattcgtattctaaaaaagtatcacttatgttatgtcaata |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7805293 |
aagttcagggtcatcgatctaacattattttgcaagtaatttgtgaggaagtttttcataattcgtattctaaaaaagtatcacttatgttatgtcaata |
7805392 |
T |
|
| Q |
101 |
tcagacttcaacttcttttggtgttgcattttaattaaattgacattgctatattttgaccaaacattattattaaatttatgtcgactagattatcaac |
200 |
Q |
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| T |
7805393 |
tcagacttcaactttttttggtgttgcattttaatgaaattgacattgctatattttgaccaaacattattattaaatttatgtcgactagattatcaac |
7805492 |
T |
|
| Q |
201 |
attannnnnnnnnagatatgttttcaagtattagcaacttgggtcttagttttaagaacact |
262 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7805493 |
att--ttttttttagatatgttttcaagtattagcaacttgggtcttagttttaagaacact |
7805552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 7834846 - 7835105
Alignment:
| Q |
1 |
aagttgagggtcatcgatctaacattattttgcaagtaatttgtgaggaagtttttcataattcgtattctaaaaaagtatcacttatgttatgtcaata |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7834846 |
aagttcagggtcatcgatctaacattattttgcaagtaatttgtgaggaagtttttcataattcgtattctaaaaaagtatcacttatgttatgtcaata |
7834945 |
T |
|
| Q |
101 |
tcagacttcaacttcttttggtgttgcattttaattaaattgacattgctatattttgaccaaacattattattaaatttatgtcgactagattatcaac |
200 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7834946 |
tcagacttcaacttcttttagggttgcattttaattaaattgacattgctatattttgaccaaacattattattaaatttatgtcgactagattatcaac |
7835045 |
T |
|
| Q |
201 |
attannnnnnnnnagatatgttttcaagtattagcaacttgggtcttagttttaagaacact |
262 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7835046 |
att--ttttttttagatatgttttcaagtattagcaacttgggtcttagttttaagaacact |
7835105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 16040473 - 16040627
Alignment:
| Q |
24 |
attattttgcaagtaatttgtgaggaagtttttcataattcgtattctaaaaaag-tatcacttatgttatgtcaatatcagacttcaacttcttttggt |
122 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||| || |||||||||||| |||||||||| |
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| T |
16040473 |
attattttgcaagtaatttgtgaggaagtttttggtaatttgtaatctaaaaaaaatatcacttatgtcat-----tatcagacttcatcttcttttggc |
16040567 |
T |
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| Q |
123 |
gttgcattttaattaaattgacattgctatattttgaccaaacattattattaaatttat |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16040568 |
gttgcattttaattaaattgacattgctatattttgaccatgcattattattaaatttat |
16040627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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