View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15940_low_35 (Length: 238)
Name: NF15940_low_35
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_low_35 |
 | |
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| [»] chr6 (24 HSPs) |
| |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 4481728 - 4481508
Alignment:
| Q |
18 |
aaactattaaccacaatcactgttgcaaattaatgtgattttaaaccttgatatatcttctacatatataacttcaagctattgacttttgtaattgtga |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
4481728 |
aaactattaaccacaatcattgttgcaaattaatgtgattttaaaccttgatatatcttctacatatataacttcaagctattgaattttgtgattgtga |
4481629 |
T |
|
| Q |
118 |
tatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaactttagattgaaggaccttcctgatttaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4481628 |
tatgcagatgagagttatttaacagatggatatttggacgcaacagtagactggattccaggtttgaaaaactttagattgaaggaccttcctgatttaa |
4481529 |
T |
|
| Q |
218 |
ttaaggtaacagatcctaatc |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4481528 |
ttaaggtaacagatcctaatc |
4481508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 54 - 218
Target Start/End: Original strand, 4489494 - 4489658
Alignment:
| Q |
54 |
gattttaaaccttgatatatcttctacatatataacttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggatatttg |
153 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| |
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|
| T |
4489494 |
gattttaaaccttgatatatattttatatatataacttcaagctattgacttttgaaattgtgatatgcagatgagagtaatctaacagatggaaatttg |
4489593 |
T |
|
| Q |
154 |
gacacaacagtagactggattccaggtttgaaaaactttagattgaaggaccttcctgatttaat |
218 |
Q |
| |
|
||||| | ||| || ||||||||||||||||||| | |||| |||||||| |||||||| |||| |
|
|
| T |
4489594 |
gacactaaagttgaatggattccaggtttgaaaagcattagtttgaaggattttcctgatataat |
4489658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 49 - 237
Target Start/End: Complemental strand, 4462126 - 4461939
Alignment:
| Q |
49 |
aatgtgattttaaaccttgatatatcttctacatatataacttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggat |
148 |
Q |
| |
|
|||||||||||| |||||||||||| || || |||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||| |
|
|
| T |
4462126 |
aatgtgattttataccttgatatatatt-tatgtatataacttcaagctattgacttttttaattatgatatgcagatgagatttatctaacagatggat |
4462028 |
T |
|
| Q |
149 |
atttggacacaacagtagactggattccaggtttgaaaaactttagattgaaggaccttcctgatttaattaaggtaacagatcctaat |
237 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||||| || ||||||||||| ||||||| ||| ||| ||| |||||||||| |
|
|
| T |
4462027 |
atttagacactgaagttgactggattccaggtttgaaaaatttcagattgaaggattttcctgaaacaataaagataaaagatcctaat |
4461939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 49 - 237
Target Start/End: Complemental strand, 4470805 - 4470619
Alignment:
| Q |
49 |
aatgtgattttaaaccttgatatatcttctacatatataacttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggat |
148 |
Q |
| |
|
||||||||||||||||||| ||||| || || |||||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||| |||||||| |
|
|
| T |
4470805 |
aatgtgattttaaaccttggtatatatt-tatgtatataacttca-gctattgactttttcaattatgatatgcagatgagagttatctaatagatggat |
4470708 |
T |
|
| Q |
149 |
atttggacacaacagtagactggattccaggtttgaaaaactttagattgaaggaccttcctgatttaattaaggtaacagatcctaat |
237 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||| ||| |||||||||| |
|
|
| T |
4470707 |
atttcgacattgaagttgactggattccaggtttgaaaaacttcagattgaaggattttcctgaaacaataaagataaaagatcctaat |
4470619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 4514295 - 4514415
Alignment:
| Q |
95 |
gctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaactttag |
194 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||||| | ||| |||||||||||||||||| ||||||||| |
|
|
| T |
4514295 |
gctatttacttttgcaattatgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgcgaaactttag |
4514394 |
T |
|
| Q |
195 |
attgaaggaccttcctgattt |
215 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
4514395 |
actgaaggaccttcctgattt |
4514415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 236
Target Start/End: Complemental strand, 4506808 - 4506674
Alignment:
| Q |
102 |
acttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaactttagattgaag |
201 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
4506808 |
acttttgtaattatgatatgcagatgagagttatctaacaaatggatatttggacactaaggtagactggattccaggtttgagaaactttagactgaaa |
4506709 |
T |
|
| Q |
202 |
gaccttcctgatttaattaaggtaacagatcctaa |
236 |
Q |
| |
|
|| ||||||||||| || | | |||||||||||| |
|
|
| T |
4506708 |
gatcttcctgattttataaggacaacagatcctaa |
4506674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 88 - 237
Target Start/End: Complemental strand, 3172706 - 3172557
Alignment:
| Q |
88 |
acttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaa |
187 |
Q |
| |
|
|||||||| |||| |||| | |||| ||||||||||||||||||||| |||| |||||||||||||||| | ||| |||||||||||||||||||||| |
|
|
| T |
3172706 |
acttcaaggtatttacttgttgaattatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaggtttgaaaa |
3172607 |
T |
|
| Q |
188 |
actttagattgaaggaccttcctgatttaattaaggtaacagatcctaat |
237 |
Q |
| |
|
|||||||||||||| | |||||| |||||||| | ||| |||||||||| |
|
|
| T |
3172606 |
actttagattgaagcatcttcctactttaattaggataaaagatcctaat |
3172557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 4503597 - 4503705
Alignment:
| Q |
49 |
aatgtgattttaaaccttgatatatcttctacatatataacttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggat |
148 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||| ||||||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
4503597 |
aatgtgattttaaaccttcatatatcttttacatatatatcttcaagctattgagttttgcaattgtgttatacagatgagagttatctaacagatggaa |
4503696 |
T |
|
| Q |
149 |
atttggaca |
157 |
Q |
| |
|
||||||||| |
|
|
| T |
4503697 |
atttggaca |
4503705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 4561509 - 4561347
Alignment:
| Q |
47 |
ttaatgtgattttaaaccttgatatatcttctacatatataacttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatgg |
146 |
Q |
| |
|
|||||||||||||||||| |||||||| || || | |||| |||| |||||||||| ||||| |||| ||| |||||||||||||| || ||||| ||| |
|
|
| T |
4561509 |
ttaatgtgattttaaaccatgatatatatt-tatacatatgactttaagctattgatttttgcaattatgacatgcagatgagagtgatctaacaaatga |
4561411 |
T |
|
| Q |
147 |
atatttggacacaacagtagactggattccaggtttgaaaaactttagattgaaggaccttcct |
210 |
Q |
| |
|
|||| ||||||| | ||| |||||||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
4561410 |
atatctggacacgaaagttgactggatcccaggtttgaaaaacttcagattgaaggatcttcct |
4561347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 210
Target Start/End: Complemental strand, 4575310 - 4575151
Alignment:
| Q |
49 |
aatgtgattttaaaccttgatatatct-tctacatatataacttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatgga |
147 |
Q |
| |
|
||||||||||||||||||||||||| | | || | |||| |||| |||||||| ||||| |||| ||| |||||||||||||| || ||||| ||| | |
|
|
| T |
4575310 |
aatgtgattttaaaccttgatatatatatttatacatatgactt---gctattgatttttgcaattatgacatgcagatgagagtgatctaacaaatgaa |
4575214 |
T |
|
| Q |
148 |
tatttggacacaacagtagactggattccaggtttgaaaaactttagattgaaggaccttcct |
210 |
Q |
| |
|
||||||||||||| | | |||||||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
4575213 |
tatttggacacaaaaattgactggatcccaggtttgaaaaacttcagattgaaggatcttcct |
4575151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 4593198 - 4593083
Alignment:
| Q |
89 |
cttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaa |
188 |
Q |
| |
|
|||||||||||| ||||| || || ||||||||||||||||||||| ||||| ||||||||||||| || | |||||| |||||||||||||||||||| |
|
|
| T |
4593198 |
cttcaagctattaactttgctacttttgatatgcagatgagagttatctaacaaatggatatttggaaactaaagtagattggattccaggtttgaaaaa |
4593099 |
T |
|
| Q |
189 |
ctttagattgaaggac |
204 |
Q |
| |
|
|||| | ||||||||| |
|
|
| T |
4593098 |
ctttcggttgaaggac |
4593083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 4458534 - 4458411
Alignment:
| Q |
117 |
atatgcagatgagagttatttaacagatggatatttggacacaacagtag---actggattccaggtttgaaaaactttagattgaaggaccttcctgat |
213 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||| || ||| | |||||||| |||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
4458534 |
atatgcagaagagagttatttaacaaatggatatttggacaaaaaagtcggtgactggatttcaggtttgcaaaactttaggttgaaggaccttcctgat |
4458435 |
T |
|
| Q |
214 |
ttaattaaggtaacagatcctaat |
237 |
Q |
| |
|
|| || ||| | |||||||||||| |
|
|
| T |
4458434 |
tttataaagattacagatcctaat |
4458411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 4517271 - 4517162
Alignment:
| Q |
103 |
cttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaactttagattgaagg |
202 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||| | ||| |||||||||||||||||| |||||||||| | |||| |
|
|
| T |
4517271 |
cttttgtgattatgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgggaaactttagactaaagg |
4517172 |
T |
|
| Q |
203 |
accttcctga |
212 |
Q |
| |
|
|||| ||||| |
|
|
| T |
4517171 |
acctgcctga |
4517162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 4602756 - 4602641
Alignment:
| Q |
89 |
cttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaa |
188 |
Q |
| |
|
||||||| |||| |||| ||| || |||||||||||||| |||||| ||||| |||||| |||||| |||| |||||| |||||||||||||||||||| |
|
|
| T |
4602756 |
cttcaagatattaacttctgtgcttatgatatgcagatgatagttatctaacaaatggatgtttggaaacaaaagtagattggattccaggtttgaaaaa |
4602657 |
T |
|
| Q |
189 |
ctttagattgaaggac |
204 |
Q |
| |
|
|||| | ||||||||| |
|
|
| T |
4602656 |
ctttcggttgaaggac |
4602641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 4617989 - 4617874
Alignment:
| Q |
89 |
cttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaa |
188 |
Q |
| |
|
|||||||||||| ||||| || || ||||||||||||||||||||| ||||| |||||| |||||| || | |||||| |||||||| ||||||||||| |
|
|
| T |
4617989 |
cttcaagctattaactttcgtccttatgatatgcagatgagagttatctaacaaatggatgtttggaaactaaagtagattggattcccggtttgaaaaa |
4617890 |
T |
|
| Q |
189 |
ctttagattgaaggac |
204 |
Q |
| |
|
|||| | ||||||||| |
|
|
| T |
4617889 |
ctttcggttgaaggac |
4617874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 4266344 - 4266460
Alignment:
| Q |
102 |
acttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtag---actggattccaggtttgaaaaactttagattg |
198 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||| |||||||||| || | | ||| | ||||||||| ||||||| |||||||||| ||| |
|
|
| T |
4266344 |
acttttgcaattgcgatatgcagatgagagttatctaacaaatggatatttagataataaagttggtgactggattcaaggtttgcaaaactttaggttg |
4266443 |
T |
|
| Q |
199 |
aaggaccttcctgattt |
215 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4266444 |
aaggaccttcctgattt |
4266460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 4484008 - 4484114
Alignment:
| Q |
90 |
ttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaa-cagatggatatttggacacaacagtagactggattccaggtttgaaaaa |
188 |
Q |
| |
|
||||||| ||| |||||||||||| ||||||||| || |||||||| ||| || ||| |||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
4484008 |
ttcaagccattaacttttgtaattatgatatgcaaataagagttatctaagcaaatgtatatttggacactgaagtagactgggttccagatttgaaaaa |
4484107 |
T |
|
| Q |
189 |
ctttaga |
195 |
Q |
| |
|
||||||| |
|
|
| T |
4484108 |
ctttaga |
4484114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 4564652 - 4564575
Alignment:
| Q |
115 |
tgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaacttt |
192 |
Q |
| |
|
|||||||||||| |||| ||| ||||| ||||||||||||| || | ||||| |||||||||||||||||||||||| |
|
|
| T |
4564652 |
tgatatgcagatcagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt |
4564575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 4298989 - 4299100
Alignment:
| Q |
89 |
cttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaa |
188 |
Q |
| |
|
||||||||||||||||| | ||||| ||| | ||||||||||||||||| ||| | |||||||| |||| | | ||||||| |||||||| ||| | || |
|
|
| T |
4298989 |
cttcaagctattgacttctataattatgacaagcagatgagagttatttgacaaacggatatttagacatcaaactagactgtattccaggattgcagaa |
4299088 |
T |
|
| Q |
189 |
ctttagattgaa |
200 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
4299089 |
ctttcgattgaa |
4299100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 4259325 - 4259425
Alignment:
| Q |
92 |
caagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaactt |
191 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||||| |||| ||| ||||| |||||||| |||| || | ||||||||| |||| || ||||| ||||| |
|
|
| T |
4259325 |
caagctattgacttttgtaattatgacaagcagataagagctatctaacaaatggatatctggataccaaagtagactgtgttcctggattgaagaactt |
4259424 |
T |
|
| Q |
192 |
t |
192 |
Q |
| |
|
| |
|
|
| T |
4259425 |
t |
4259425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 4569001 - 4568874
Alignment:
| Q |
86 |
taacttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaa |
185 |
Q |
| |
|
|||||| |||||| || |||||| ||| | ||||||||||||| |||| | ||| |||||||||||| ||| | ||| |||||||||||||||||| |
|
|
| T |
4569001 |
taactttaagctaatggattttgtgattataatatgcagatgag--ttatctgacaaatggatatttggtcactaaagttgactggattccaggtttgcg |
4568904 |
T |
|
| Q |
186 |
aaactttagattgaaggaccttcctgattt |
215 |
Q |
| |
|
|||| ||||| | |||||||| | |||||| |
|
|
| T |
4568903 |
aaacattagactaaaggacctgcttgattt |
4568874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 4571923 - 4571833
Alignment:
| Q |
102 |
acttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaacttt |
192 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| | ||| | |||||||||||||| | ||| ||||| || ||||| |||| |||||| |
|
|
| T |
4571923 |
acttttgtaaatttgatatgcagatgagagttatctgacaaacggatatttggacactaaagtggactgtatgccaggactgaagaacttt |
4571833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 4626914 - 4626796
Alignment:
| Q |
90 |
ttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaac |
189 |
Q |
| |
|
|||||| ||||||||| ||||||| ||| | |||||||||| |||||| ||| |||||||||| ||||| | | |||| || ||||| || ||| | ||| |
|
|
| T |
4626914 |
ttcaagatattgacttgtgtaattatgaaaagcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaac |
4626815 |
T |
|
| Q |
190 |
tttagattgaaggaccttc |
208 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
4626814 |
tttcggctgaaggaccttc |
4626796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 4612899 - 4613006
Alignment:
| Q |
102 |
acttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaactttagattgaag |
201 |
Q |
| |
|
|||||||||| | ||| ||||||||||||||||| | ||| | ||||||||||| || | ||| ||||| |||| ||| ||| | |||||| || ||||| |
|
|
| T |
4612899 |
acttttgtaaatttgacatgcagatgagagttatctgacaaacggatatttggatactaaagtggactgtattcaaggattgcagaactttcgactgaag |
4612998 |
T |
|
| Q |
202 |
gaccttcc |
209 |
Q |
| |
|
|| ||||| |
|
|
| T |
4612999 |
gatcttcc |
4613006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 1282080 - 1281982
Alignment:
| Q |
89 |
cttcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaa |
188 |
Q |
| |
|
|||||||||||| ||||||||| || |||| |||||||||||||||| ||||| ||||||||||||| |||| |||||| |||||||||||||||||||| |
|
|
| T |
1282080 |
cttcaagctattaacttttgtacttatgat-tgcagatgagagttatctaacaaatggatatttggaaacaaaagtagattggattccaggtttgaaaaa |
1281982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 405 - 317
Alignment:
| Q |
115 |
tgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaactttagattgaagga |
203 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||||| |||| ||| || |||||||||||||||||||||||| | |||||||| |
|
|
| T |
405 |
tgatatgcagatgagagacatctaacaaatggatatttggaaacaaaagtcgagtggattccaggtttgaaaaactttcggttgaagga |
317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 1675168 - 1675080
Alignment:
| Q |
115 |
tgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaactttagattgaagga |
203 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||||| |||| ||| || |||||||||||||||||||||||| | |||||||| |
|
|
| T |
1675168 |
tgatatgcagatgagagacatctaacaaatggatatttggaaacaaaagtcgagtggattccaggtttgaaaaactttcggttgaagga |
1675080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 20863013 - 20863126
Alignment:
| Q |
91 |
tcaagctattgacttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaact |
190 |
Q |
| |
|
|||||||| ||||||||| | || |||||| |||||||||||||| ||||| ||||||||||||| || | ||| || |||||||||||||| ||| | |
|
|
| T |
20863013 |
tcaagctactgacttttggagttatgatatacagatgagagttatctaacaaatggatatttggagactaaagttgatcggattccaggtttgcgaaatt |
20863112 |
T |
|
| Q |
191 |
ttagattgaaggac |
204 |
Q |
| |
|
| ||| |||||||| |
|
|
| T |
20863113 |
tcagactgaaggac |
20863126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 16685482 - 16685544
Alignment:
| Q |
117 |
atatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccagg |
179 |
Q |
| |
|
||||||||||||||||||| | ||| | |||||||||||||| | ||| ||||| |||||||| |
|
|
| T |
16685482 |
atatgcagatgagagttatctgacaaacggatatttggacactaaagtggactgtattccagg |
16685544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 24103953 - 24103837
Alignment:
| Q |
102 |
acttttgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagt---agactggattccaggtttgaaaaactttagattg |
198 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||| |||||||||| |||| | ||| | | |||||||||||||| | |||||||| ||| |
|
|
| T |
24103953 |
acttttgcaattgtaatatgcagatgagagttatctaacaaatggatatttagacaataaagttggtggcaggattccaggtttgcataactttaggttg |
24103854 |
T |
|
| Q |
199 |
aaggaccttcctgattt |
215 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
24103853 |
aaggaccttcctgattt |
24103837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 2904 - 3009
Alignment:
| Q |
107 |
tgtaattgtgatatgcagatgagagttatttaacagatggatatttggacacaacagtagactggattccaggtttgaaaaactttagattgaaggacct |
206 |
Q |
| |
|
||||||| ||| | |||||||| |||||||| ||| |||||||||||||| | |||||| || ||||| ||| ||||||||||| || | |||||||| |
|
|
| T |
2904 |
tgtaattatgacaagcagatgatagttatttgacaagtggatatttggacaacaaagtagattgtattccgggtatgaaaaactttcgactaaaggacct |
3003 |
T |
|
| Q |
207 |
tcctga |
212 |
Q |
| |
|
|||||| |
|
|
| T |
3004 |
tcctga |
3009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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