View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15940_low_4 (Length: 709)

Name: NF15940_low_4
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15940_low_4
NF15940_low_4
[»] chr5 (1 HSPs)
chr5 (19-695)||(43365973-43366649)


Alignment Details
Target: chr5 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 19 - 695
Target Start/End: Complemental strand, 43366649 - 43365973
Alignment:
Q  19 gttgctaatatcttccttttgtttcttcgaatttgaagacaagtgaaggtacttacaagcatgatctatggaattcgaggaactcgcagcttttctctgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43366649 gttgctaatatcttccttttgtttcttcgaatttgaagacaagtgaaggtacttacaagcatgatctatggaattcgaggaactcgcagcttttctctgc 43366550  T
Q  119 ctgcagtaatgccggtgtcaactttgcaagtaaacttcatcctagactcctagctagtccttttttcatctcatcaatttaattttgattgagtgtattt 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  43366549 ctgcagttatgccggtgtcaactttgcaagtaaacttcatcctagactcctag----tccttttttcatctcatcaatttaattttgattgagtgtattt 43366454  T
Q  219 atttatatttctaattgttgcagaggctaatagcaaaactcatccggaccgatacttgttaatcgcaaccagtggaggcttaaatcaacagagaacaggg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43366453 atttatatttctaattgttgcagaggctaatagcaaaactcatccggaccgatacttgttaatcgcaaccagtggaggcttaaatcaacagagaacaggg 43366354  T
Q  319 gtaagctaagcttctttattaatgaactgtggcatttgtttgtttttgcaatccttttgatcaaataaata----taaaggaaggagttcagtgaggtta 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  43366353 gtaagctaagcttctttattaatgaactgtggcatttgtttgtttttgcaatccttttgatcaaataaataaatataaaggaaggagttcagtgaggtta 43366254  T
Q  415 aagtattacttggaatatgtatatctttctttatgtaaccaaattgttttatttaagcatgaatagttcttccatttcattagtagacataattgcattc 514  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43366253 aagtattacttggaatatgtatatctttctttatgtaaccaattttttttatttaagcatgaatagttcttccatttcattagtagacataattgcattc 43366154  T
Q  515 tgagtactaatataactatgctgcaatctaaaacatgtaatatgtaatatgctataactttatttcatagagtgggaccgtggtcatttgcaaaaaagta 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43366153 tgagtactaatataactatgctgcaatctaaaacatgtaatatgtaatatgctataactttatttcatagagtgggaccctggtcatttgcaaaaaagta 43366054  T
Q  615 taggatgaaatttctacccaataattataggtctgcacaaattggtgattgatatacagattttgtatgtgccgttcggct 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43366053 taggatgaaatttctacccaataattataggtctgcacaaattggtgatcgatatacagattttgtatgtgccgttcggct 43365973  T

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