View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_low_6 (Length: 509)
Name: NF15940_low_6
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 15 - 504
Target Start/End: Original strand, 45934731 - 45935230
Alignment:
| Q |
15 |
gtttctttatctatcaatatggaatcatctaccacctgaatattgcgcatcgtagcaaaaatattctggtacaacaactcgttttctttgctctacatta |
114 |
Q |
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| T |
45934731 |
gtttctttatctatcaatatggaatcatctaccacctgaatattgcgcatcgtagcaaaaatattctggtacaac---tcgttttctttgctctacatta |
45934827 |
T |
|
| Q |
115 |
atttttgcaagttttaccccactgtctaactatct-caggnnnnnnnnatcgtaggtattcacactttcttgggcagtcttggttatagtccttatcgtc |
213 |
Q |
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||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45934828 |
atttttgcaagttttactccactgtctaactatcttcaggttttttttatcgtaggtattcgcactttcttgggcagtcttggttatagtccttatcgtc |
45934927 |
T |
|
| Q |
214 |
ttaaaggtatgtgattttgtatatgcaaaaccattcctatttgcctaaattaaaacataataaaatacaaa------------ttttagtcataaaacat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45934928 |
ttaaaggtatgtgattttgtatatgcaaaaccattcctatttgcctaaattaaaacataataaaatacaaattttagttcaaattttagtcataaaacat |
45935027 |
T |
|
| Q |
302 |
ttcttttcaatcaagctagacgagctttagtatagacaattgtagctgttgcatagtcaaacttatagtataaaaaatataatttctgatgtttgcatga |
401 |
Q |
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| T |
45935028 |
ttcttttcaatcaagctagacgagctttagtatagacaattgtagctgttgcatagtcaaacttatagtataaaaaatataatttctgatgtttgcatga |
45935127 |
T |
|
| Q |
402 |
attttcttatgggcatcagatgcttttcatgggtaaacgaagatttggcaccaactttcagctcaagttccgtattctcaaggcacttctgtttcttggc |
501 |
Q |
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| T |
45935128 |
attttcttatgggcatcagatgctttccatgggtaaacgaagatttggcaccaactttcagctcaagttccgtattctcaaggcacttctatttcttggc |
45935227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 17 - 504
Target Start/End: Original strand, 15816966 - 15817459
Alignment:
| Q |
17 |
ttctttatctatcaatatggaatcatctaccacctgaatattgcgcatcgtagcaaaaatattctggtacaacaactcgttttctttgctctacattaat |
116 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |
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| T |
15816966 |
ttctttatctaccaatatggaattgtctaccacctgaatattgcgcgtcgtagcaaaaatattctggtacaacaacttgttttctttgttctaccttaat |
15817065 |
T |
|
| Q |
117 |
ttttgcaagttttaccccactgtctaactatctcaggnnnnnnnnatcgtaggtattcacactttcttgggcagtcttggttatagtccttatcgtctta |
216 |
Q |
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| T |
15817066 |
ttttgcaaattttacccctccgtctaactacctttggtttttcttatcataggtattcgcactttcttgggtagttttggttatagtccttatcgtctta |
15817165 |
T |
|
| Q |
217 |
aaggtatgtgattttgtatatgcaaaaccattccta-------tttgcctaaattaaaacataataaaatacaaattttagtcataaaacatttcttttc |
309 |
Q |
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||||||||| ||||||| | | |||| ||| ||||||||||||||| | |||||| |||||||||||| ||| ||||||||||||||| |
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| T |
15817166 |
aaggtatgtacttttgtagctcggag--catttctaatgtaattttgcctaaattaaagcctaataacatacaaattttattcaaaaaacatttcttttc |
15817263 |
T |
|
| Q |
310 |
aatcaagctagacgagctttagtatagacaattgtagctgttgcatagtcaaacttatagtataaa-aaatataatttctgatgtttgcatgaattttct |
408 |
Q |
| |
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||||||| |||||||| |||| ||||| || |||| |||||||||| ||| ||| ||||| || |||| |||||||||||||||| ||||| |||| |
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| T |
15817264 |
gatcaagcaagacgagcattagattagaccatagtagaggttgcatagttaaaattacagtatgaataaatctaatttctgatgtttggatgaactttca |
15817363 |
T |
|
| Q |
409 |
tatgggcatcagatgcttttcatgggtaaacgaagatttggcaccaactttcagctcaagttccgtattctcaaggcacttctgtttcttggcttc |
504 |
Q |
| |
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|||||| |||||||| ||| |||||||| |||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
15817364 |
tatgggtatcagatggtttccatgggtagacgaagatttggtaccgactttcagctcatgttccgtattctcaaggcacttctgtttctcggcttc |
15817459 |
T |
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