View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15940_low_8 (Length: 498)
Name: NF15940_low_8
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15940_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 51 - 488
Target Start/End: Original strand, 1960075 - 1960502
Alignment:
| Q |
51 |
atattttggtgtgcttggataagattgctccaaagaagtaaaagaagttttgaattgcattgagagggataatcttttttcccccatcattctccttcaa |
150 |
Q |
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| T |
1960075 |
atattttggtgtgctttgataagattgctccaaagaagtaaaagaagttttgaattgcattgagagggataatcttttttcccccatcattctccttcaa |
1960174 |
T |
|
| Q |
151 |
actctgtcaaacaatccttgcctcacattttctgtgataaaggattacattgctcggaagcttgagcaggaatcaaagatgattgaggacgaacaacaag |
250 |
Q |
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| T |
1960175 |
actctgtcaaacaatccttgcctcacattttctgtgataaaggattacattgctcggaagcttgagcaggaatcaaagatgattgaggacgat-aagaa- |
1960272 |
T |
|
| Q |
251 |
ctattaagaaatatcaggttggtttgatattattcttaactttatttgataacttatgtatttgtctgtctgttcatcttgtttccattgcatataataa |
350 |
Q |
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| T |
1960273 |
-tatta-------tcaggttggtttgatattattcttaactttatttgataacttatgtatttgtctgtctgttcatcttgtttccattgcatataacaa |
1960364 |
T |
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| Q |
351 |
atcactgttttcatgttttctgatatttttacattactaacaacataaagaaaagtatgatgatttccatacaataaacagggatagtggaaaagactat |
450 |
Q |
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| T |
1960365 |
atcactgttttcatgttttctgatatttttacattactaacaacataaagaaaagtatgatgatttccatacaataaacagggatagtggaaaagactat |
1960464 |
T |
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| Q |
451 |
ggtttagttatgaacaattttcgcaaaagtgtgatgat |
488 |
Q |
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| T |
1960465 |
ggtttagttatgaacaattttcgcaaaagtgtgatgat |
1960502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 40 - 272
Target Start/End: Original strand, 5896769 - 5897001
Alignment:
| Q |
40 |
gatgtactcaaatattttggtgtgcttggataagattgctccaaagaagtaaaagaagttttgaattgcattgagagggataatcttttttcccccatca |
139 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||||||| | |
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| T |
5896769 |
gatgtactcaaatattttggtgagcttggagaagattgctccaaagaagtaaaagaagttttgaattacattgaaagggataatattttaccccccataa |
5896868 |
T |
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| Q |
140 |
ttctccttcaaactctgtcaaacaatccttgcctcacattttctgtgataaaggattacattgctcggaagcttgagcaggaatcaaagatgattgagga |
239 |
Q |
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| T |
5896869 |
ttgtccttcaaactctgtcaaaaaacccttgcctcacactttcagtgatcaaggattacattgctcggaagcttgagcaggaatcaaaggtgattgagga |
5896968 |
T |
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| Q |
240 |
cgaacaacaagctattaagaaatatcaggttgg |
272 |
Q |
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|| | |||||||||| |||||||||||||||| |
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| T |
5896969 |
ggaccgacaagctattgagaaatatcaggttgg |
5897001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 464
Target Start/End: Original strand, 5897143 - 5897205
Alignment:
| Q |
402 |
aaagtatgatgatttccatacaataaacagggatagtggaaaagactatggtttagttatgaa |
464 |
Q |
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|||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| |
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| T |
5897143 |
aaagcatgatgatttccatacaatagacaccgatagtggataagactatggtttagttatgaa |
5897205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 5897030 - 5897063
Alignment:
| Q |
284 |
tcttaactttatttgataacttatgtatttgtct |
317 |
Q |
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| T |
5897030 |
tcttaactttatttgatagcttatgtatttgtct |
5897063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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