View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15940_low_9 (Length: 481)

Name: NF15940_low_9
Description: NF15940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15940_low_9
NF15940_low_9
[»] chr8 (2 HSPs)
chr8 (185-470)||(32907493-32907779)
chr8 (18-163)||(32906682-32906827)
[»] chr6 (1 HSPs)
chr6 (193-260)||(7441643-7441709)
[»] chr5 (1 HSPs)
chr5 (185-259)||(38956490-38956564)
[»] chr3 (1 HSPs)
chr3 (191-259)||(29566509-29566577)
[»] chr7 (1 HSPs)
chr7 (198-264)||(33810558-33810624)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 185 - 470
Target Start/End: Original strand, 32907493 - 32907779
Alignment:
Q  185 gtgggtcgagtaccccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataaatt--gtcattnnnnnnnntgtaat 282  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||        ||||||    
T  32907493 gtgggtctagtaccccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataaattttgtcattaaaaaaa-tgtaat 32907591  T
Q  283 gcaaactatccctggttttctatgttgtattattgtgttttactagttcattgttgatatgttgcataagaatgtgttttataaatactatccagttgtc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32907592 gcaaactatccctggttttctatgttgtattattgtgttttactagttcattgttgatatgttgcataagaatgtgttttaaaaatactatccagttgtc 32907691  T
Q  383 tcttttaaccacatccttgaagaaccttcaacttgaaactatatcaatatgaatggccacaaaattcttgttgactgctaattttctt 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32907692 tcttttaaccacatccttgaagaaccttcaacttgaaactatatcaatatgaatggccacaaaattcttgttgactgctaattttctt 32907779  T

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Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 32906682 - 32906827
Alignment:
Q  18 agatttggatttacgctgttttcccctcgacaataactttacttgcaacgctgcatcataattagtgaaaaatacccaaattcactttcttgcttgagtt 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32906682 agatttggttttacgctgttttcccctcgacaataactttacttgcaacgctgcatcataattagtgaaaaatacccaaattcactttcttgcttgagtt 32906781  T
Q  118 ttaatcaatgcaatgtttctcaatctttttcgaaatattgcttata 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32906782 ttaatcaatgcaatgtttctcaatctttttcgaaatattgcttata 32906827  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 7441643 - 7441709
Alignment:
Q  193 agtaccccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataaa 260  Q
    |||||||||| |||||| | ||||||| || ||||||||||| ||||||||||||||| |||||||||    
T  7441643 agtaccccttatacttttcctgagttgcgggttaagtactctttgtacttctctcctt-tctaataaa 7441709  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 38956490 - 38956564
Alignment:
Q  185 gtgggtcgagtaccccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataa 259  Q
    ||||| ||| ||||||||||| ||| ||||| |||||| ||||||||||| |||||||||||  |||| ||||||    
T  38956490 gtggggcgaataccccttgtatttttcttgatttgtgggttaagtactctttgtacttctcttattatataataa 38956564  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 29566577 - 29566509
Alignment:
Q  191 cgagtaccccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataa 259  Q
    |||||| |||||||| ||| || || |||||| |||||||||| || |||||||||| |||||||||||    
T  29566577 cgagtatcccttgtaattttctcgaattgtgggttaagtactccatatacttctctcattatctaataa 29566509  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 33810624 - 33810558
Alignment:
Q  198 cccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataaattgt 264  Q
    |||||||||||| |  || |||||| ||||||||| | |||| ||||||| ||||||||||||||||    
T  33810624 cccttgtacttttcccgatttgtgggttaagtactttttgtaattctctctttatctaataaattgt 33810558  T

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