View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_100 (Length: 319)
Name: NF15941_high_100
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_100 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 45695437 - 45695131
Alignment:
| Q |
1 |
tttgtgctgctgtttcttcattgcaattcgcttgtagggaccctgatctgcatcaacacaacacattaggtacataaaaatcaaatataaattcatgcag |
100 |
Q |
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| T |
45695437 |
tttgtgctgctgtttcttcattgcaattcgcttgtagggaccctgatctgcatcaacacaacatattaggtacataaaa-tcaaatataaattcatgcag |
45695339 |
T |
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| Q |
101 |
atgaatatacactatacacaacggtcagagaggtgggaacctttgaattcaattatacatgaaagaaaagacactaaccctgtagtattcatggattcca |
200 |
Q |
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| T |
45695338 |
atgaatatacactatacacaacggtcagagaggtgggaacctttgaattcaattatacatgaaagaaaagacactaaccctgtagtattcatggattcca |
45695239 |
T |
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| Q |
201 |
atggttgagtttcaattggagtcacctccacactattttgcagttccttctctttttcctttatctgcaggttttcactcaaatcattttgtcatgtact |
300 |
Q |
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| T |
45695238 |
atggttgtgtttcaattggagtcacctccacactattttgcagttccttctctttttcctttatctgcaggttttcactcaaatcattttgtcatgtact |
45695139 |
T |
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| Q |
301 |
gttatatt |
308 |
Q |
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|||||||| |
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| T |
45695138 |
gttatatt |
45695131 |
T |
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