View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_101 (Length: 318)
Name: NF15941_high_101
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_101 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 20471029 - 20470739
Alignment:
| Q |
15 |
agacaactctcaaattataggatcaatcaaggattctgataggacacctacacatattctagaagaaaatgaggcca-cgggagagagaacggaagttgg |
113 |
Q |
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| T |
20471029 |
agacaactttcaaattataggatcaatcaaggattctgataggacacctacacatattctagaagaaaatgaggccaacgggagagaggacggaagttgg |
20470930 |
T |
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| Q |
114 |
ttagtgacttggagctagattttaggatagttggatgagaatatattgtgagttgtggtgagtgaggggattcattcatgtattttctagttggtcttta |
213 |
Q |
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| T |
20470929 |
ttagtgacttggagctagattttaggatagttggatgagaatatattgtgagtagtgctgagtgaggggattcattcatgtattttctagttggtcttta |
20470830 |
T |
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| Q |
214 |
agagagtttctctctggtaggagcatagctttgtattagaactctctgtctctggtttatctttccctttctgctgtaagatgatctgtgc |
304 |
Q |
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| T |
20470829 |
agagagtttctctctggtaggagcatagctttgtattaggactctccgcctctggtttatcttttcttttctgctgtaagatgatctgtgc |
20470739 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 1734449 - 1734545
Alignment:
| Q |
49 |
tctgataggacacctacacatattctagaagaaaatgaggccacgggagagagaacggaagttggttagtgacttggagctagattttaggatagtt |
145 |
Q |
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|||||||||| ||||| |||||||||||| || || ||||| | ||||||||| | ||||| ||| ||||| || ||||||||| ||||| |||| |
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| T |
1734449 |
tctgataggaaacctaggtatattctagaaggaagtggggccatgagagagagaatgaaagttagtttgtgacgtgtagctagattctaggagagtt |
1734545 |
T |
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