View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_109 (Length: 311)
Name: NF15941_high_109
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_109 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 43506349 - 43506644
Alignment:
| Q |
16 |
caacatcgtcaaccgttgcccggaaagatcaacacgctgaccatctttctcacgcatctcctgcaatatcctcataacacgttcttcacattccttatct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43506349 |
caacatcgtcaaccgttgcccggaaagatcaacacgctgaccatctttctcacgtacctcctgcaatatcctcataacacgttcttcacattccttatct |
43506448 |
T |
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| Q |
116 |
tcaaccacgtcattatcatcattaccatctccaccatcattctcataaatcttcacaagcctaatctccgcatccttaagtagcttctcataagcttcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43506449 |
tcaaccacgtcattatcatcattaccatctccaccatcattctcataaatcttcacaagcctaatctccgcatccttaagtagcttctcataagcttcat |
43506548 |
T |
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| Q |
216 |
gcatctcatctttttgcaaaagctctttataaccacgcttctcattctcaacattttctctacatttagtttctctttccgtaacatgaattatcc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43506549 |
gcatctcatctttttgcaaaagctctttataaccacgcttctcattctcaacattttctctacatttagtttctctttccgtaacatgaattatcc |
43506644 |
T |
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