View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_11 (Length: 554)
Name: NF15941_high_11
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 46920783 - 46921306
Alignment:
| Q |
18 |
ctaacgacttcacttttccgtgtgttttcaaagcttctgctcttttgcagatacccatgactggtaaacagattcacggtcttgctttaaagggtgggat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920783 |
ctaacgacttcacttttccgtgtgttttcaaagcttctgctcttatgcagatacccatgactggtaaacagattcacggtcttgctttaaagggtgggat |
46920882 |
T |
|
| Q |
118 |
gatatatgatgtgtttgttgggtgtagttgttttgatatgtattgtaaaactgggtttcgcggtgatgcttgtaacatgtttgatgaaatgcctcataga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46920883 |
gatatatgatgtgtttgttgggtgtagttgttttgatatgtattgtaaaactgggtttcacggtgatgcttgtaacatgtttgatgaaatgcctcataga |
46920982 |
T |
|
| Q |
218 |
aacttggctacttggaatgcttatatttctaatgcagttcaagatcgaaggtctttggatgcaattgcggcgtttaaggagttcctttgtgtgcatggag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46920983 |
aacttggctacttggaatgcttatatttctaatgcagttcaagatcgaaggtctttggatgtgattgcggcgtttaaggagttcctttgtgtgcatggag |
46921082 |
T |
|
| Q |
318 |
agccgaattcgattacattttgtgcgtttttgaatgcttgcgttgatatgatgagattgaatctcgggcgtcagttacatgcttttattgttcggtgtgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46921083 |
agccgaattcgattacattttgtgcgtttttgaatgcttgcgttgatatgatgagattgaatctcgggcgtcagttacatgcttttattgttcggtgtgg |
46921182 |
T |
|
| Q |
418 |
atataaagaggatgtttctgttgcgaatgggcttattgatttctatggaaaatgtggggacattgtatctgctgaaatggtttttagtagaattggtaat |
517 |
Q |
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| T |
46921183 |
atataaagaggatgtttctgttgcgaatgggcttattgatttctatggaaaatgtggggacattgtatctgctgaaatggtttttagtagaattggtaat |
46921282 |
T |
|
| Q |
518 |
aggaagaatgttgtttcatggtgc |
541 |
Q |
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|||||||||||||||||||||||| |
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| T |
46921283 |
aggaagaatgttgtttcatggtgc |
46921306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 23 - 327
Target Start/End: Complemental strand, 46891937 - 46891634
Alignment:
| Q |
23 |
gacttcacttttccgtgtgttttcaaagcttctgctcttttgcagatacccatgactggtaaacagattcacggtcttgctttaaagggtgggatgatat |
122 |
Q |
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||||| ||||||| ||||||||||||||||||| | |||| | || |||||| |||| |||| |||| ||| | || ||||||| ||| |||| |
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| T |
46891937 |
gacttaacttttcaatgtgttttcaaagcttctgattctttgaacatgtccatgagtggttaacaagttcatggtttagcattaaaggatggtcaaatat |
46891838 |
T |
|
| Q |
123 |
atgatgtgtttgttgggtgtagttgttttgatatgtattgtaaaactgggtttcgcggtgatgcttgtaacatgtttgatgaaatgcctcatagaaactt |
222 |
Q |
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||||||| |||||||||||| || ||||||||||| ||| ||||||||| || | | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46891837 |
atgatgtatttgttgggtgtggtgcttttgatatgtgttgcaaaactgggctttg-gttgatgcttgtaacatgtttgatgaaatgcctcatagaaactt |
46891739 |
T |
|
| Q |
223 |
ggctacttggaatgcttatatttctaatgcagttcaagatcgaaggtctttggatgcaattgcggcgtttaaggagttcctttgtgtgcatggagagccg |
322 |
Q |
| |
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||| |||||||||||||||||||| | ||||||||||||| | | || |||||||||||| | |||||||||||| || ||||||||||||||||| |
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| T |
46891738 |
ggccacttggaatgcttatatttccattgcagttcaagattggcgtactatggatgcaattgaagtgtttaaggagtttctatgtgtgcatggagagcca |
46891639 |
T |
|
| Q |
323 |
aattc |
327 |
Q |
| |
|
||||| |
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| T |
46891638 |
aattc |
46891634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 335 - 494
Target Start/End: Complemental strand, 46891584 - 46891425
Alignment:
| Q |
335 |
ttttgtgcgtttttgaatgcttgcgttgatatgatgagattgaatctcgggcgtcagttacatgcttttattgttcggtgtggatataaagaggatgttt |
434 |
Q |
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||||||||| | ||||||| || ||||| || |||||||||||| |||| | | ||||||| | ||||| ||| | |||||||||||||||||||| |
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| T |
46891584 |
ttttgtgcggtcctgaatgcctgtgttgacttgttgagattgaatcacgggtgacggttacattcatttataattcattttggatataaagaggatgttt |
46891485 |
T |
|
| Q |
435 |
ctgttgcgaatgggcttattgatttctatggaaaatgtggggacattgtatctgctgaaa |
494 |
Q |
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|||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||| |
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| T |
46891484 |
ctgttgcgaatgggcttattagtttttgtgggaaatgtggggacattgtatctgctgaaa |
46891425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 38310940 - 38311463
Alignment:
| Q |
18 |
ctaacgacttcacttttccgtgtgttttcaaagcttctgctcttttgcagatacccatgactggtaaacagattcacggtcttgctttaaagggtgggat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38310940 |
ctaacgacttcacttttccgtgtgttttcaaagcttctgcttttgtgcagatacccatgactggtaaacagattcacggtcttgctttaaagggtgggat |
38311039 |
T |
|
| Q |
118 |
gatatatgatgtgtttgttgggtgtagttgttttgatatgtattgtaaaactgggtttcgcggtgatgcttgtaacatgtttgatgaaatgcctcataga |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38311040 |
gatatatgatgtgtttgttgggtgtagttgttttgatatgtattgtaaaactgggtttcgcggtgatgcttgtaacatgtttgatgaaatgcctcaaaga |
38311139 |
T |
|
| Q |
218 |
aacttggctacttggaatgcttatatttctaatgcagttcaagatcgaaggtctttggatgcaattgcggcgtttaaggagttcctttgtgtgcatggag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| |
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| T |
38311140 |
aacttggctacttggaatgcttatatttctaatgcagttcaagatcgaaggtctttggatgcgattgtggcgtttaaggagtttctttgtgtgcatggag |
38311239 |
T |
|
| Q |
318 |
agccgaattcgattacattttgtgcgtttttgaatgcttgcgttgatatgatgagattgaatctcgggcgtcagttacatgcttttattgttcggtgtgg |
417 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311240 |
agccgaattcgattacattttgtgcatttttgaatgcttgcgttgatatggtgagattgaatctcgggcgtcagttacatgcttttattgttcggtgtgg |
38311339 |
T |
|
| Q |
418 |
atataaagaggatgtttctgttgcgaatgggcttattgatttctatggaaaatgtggggacattgtatctgctgaaatggtttttagtagaattggtaat |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38311340 |
atataaagaggatgtttctgttgcgaatgggcttattgatttctatggaaaatgtggggacattgtatctgctgaaatggtttttaatagaattggtaat |
38311439 |
T |
|
| Q |
518 |
aggaagaatgttgtttcatggtgc |
541 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
38311440 |
aggaagaatgttgtttcatggtgc |
38311463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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