View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_111 (Length: 310)
Name: NF15941_high_111
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_111 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 41423109 - 41422830
Alignment:
| Q |
14 |
gcaaaggcatatggattatgtggtaacctatttggatcaatgagaatccctccatactcatcatcaaaggcatcaagtataagatttctgtaatacaagc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41423109 |
gcaaaggcatatggattatgtggtaacctatttggatcaatgagaatccctccatactcatcatcaaaggcatcaagtataagatttctgtaatacaagc |
41423010 |
T |
|
| Q |
114 |
ttgaagttgatccattaatacaatgagaacttgtttctgatgcaaaatcatctgaaaaaatcacagctttatctgccaaataagtgtcatctgaggcact |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41423009 |
ttgaagttgatccattaatacaatgagaacttgtttctgatgcaaaatcatctgaaaaaatcacagctttatctgccaaataagtgtcatctgaggcact |
41422910 |
T |
|
| Q |
214 |
acaagtcttaagaaacaaccctgaaattaaagatgataaactattaaacccatgttccacattctctttaacattttagt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41422909 |
acaagtcttaagaaacaaccctgaaattaaagatgataaactattaaacccatgttccacattctctttaacattttagt |
41422830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University