View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_high_112 (Length: 310)

Name: NF15941_high_112
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_high_112
NF15941_high_112
[»] chr4 (3 HSPs)
chr4 (7-276)||(1064667-1064932)
chr4 (45-119)||(36103348-36103422)
chr4 (51-85)||(6830878-6830912)
[»] chr1 (3 HSPs)
chr1 (45-133)||(35500779-35500867)
chr1 (58-127)||(9958203-9958272)
chr1 (58-127)||(32177570-32177639)
[»] chr7 (2 HSPs)
chr7 (45-127)||(12380851-12380933)
chr7 (45-119)||(23100271-23100345)
[»] chr3 (3 HSPs)
chr3 (45-127)||(1418593-1418675)
chr3 (45-127)||(30378492-30378574)
chr3 (65-119)||(43811018-43811072)
[»] chr2 (5 HSPs)
chr2 (45-127)||(18581349-18581431)
chr2 (45-127)||(38698380-38698462)
chr2 (45-119)||(13072291-13072365)
chr2 (53-127)||(5276383-5276457)
chr2 (58-127)||(21206088-21206157)
[»] chr5 (1 HSPs)
chr5 (58-127)||(41870989-41871058)
[»] scaffold0552 (1 HSPs)
scaffold0552 (51-85)||(10380-10414)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 1064667 - 1064932
Alignment:
Q  7 ctagacatttcacaacggacgatattgtgtgtaaaatattctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttat 106  Q
    |||||||||||||||| || |||||| | |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  1064667 ctagacatttcacaaccgaagatattctctgtaaaatattccccttcatagtttcttcttgcaagtgtttattaattgtcttatttttttctaatcttat 1064766  T
Q  107 tctcaattcattccaaatattaattatcttttccaattcattccaatcatgttcattgtgatctatgcaaagatgttttttattcattatcttttccaat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||         ||||||||||||||||||||||||    
T  1064767 tctcaattcattccaaatattaattatcttttccaattcattccaatcatgttcattgtga--tatg---------tttttattcattatcttttccaat 1064855  T
Q  207 tatg--tttgtgtt-----tcattatgagataaaccacttttatgggtgaggaatgaggatgttataaatataaata 276  Q
    ||||  ||||||||     |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1064856 tatgtttttgtgtttaagctcattatgagataaaccacttttatgggagaggaatgaggatgttataaatataaata 1064932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 36103422 - 36103348
Alignment:
Q  45 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattc 119  Q
    ||||| |||||| ||||||||| |||||||||||||||| | |||||||| || ||||||||| |||||||||||    
T  36103422 ttctctttcataatttcttcttccaagtgtttatcaattattttatttttatccaatcttattttcaattcattc 36103348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 6830878 - 6830912
Alignment:
Q  51 ttcatagtttcttcttgcaagtgtttatcaattgt 85  Q
    |||||||||||||||||||||| ||||||||||||    
T  6830878 ttcatagtttcttcttgcaagtatttatcaattgt 6830912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 35500779 - 35500867
Alignment:
Q  45 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatattaattat 133  Q
    ||||| |||| | |||||||||||||||||||||||||||||| |||||| || ||| |||||||||||||||||||| ||||| ||||    
T  35500779 ttctctttcacaatttcttcttgcaagtgtttatcaattgtctgatttttatcaaattttattctcaattcattccaagtattagttat 35500867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 9958272 - 9958203
Alignment:
Q  58 tttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 127  Q
    |||||||||||||||||||||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  9958272 tttcttcttgcaagtgtttatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 9958203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 32177570 - 32177639
Alignment:
Q  58 tttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 127  Q
    |||||||||||||||||||||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  32177570 tttcttcttgcaagtgtttatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 32177639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 12380933 - 12380851
Alignment:
Q  45 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 127  Q
    ||||| |||| | |||||||||||||||||||||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  12380933 ttctctttcacaatttcttcttgcaagtgtttatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 12380851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 23100271 - 23100345
Alignment:
Q  45 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattc 119  Q
    ||||| |||||| ||||||||||||||||| |||||||||| |  ||||  || || ||||||||||||||||||    
T  23100271 ttctctttcataatttcttcttgcaagtgtatatcaattgtttggttttcatccaaccttattctcaattcattc 23100345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 1418593 - 1418675
Alignment:
Q  45 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 127  Q
    ||||| |||| | ||||||||||||||||| |||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  1418593 ttctctttcacaatttcttcttgcaagtgtctatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 1418675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 30378574 - 30378492
Alignment:
Q  45 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 127  Q
    ||||| |||| | ||||||||||||||||| |||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  30378574 ttctctttcacaatttcttcttgcaagtgtctatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 30378492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 43811072 - 43811018
Alignment:
Q  65 ttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattc 119  Q
    |||||||||||||| |||||||| |||||| || |||||||||| ||||||||||    
T  43811072 ttgcaagtgtttataaattgtctaatttttatccaatcttattcacaattcattc 43811018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 18581349 - 18581431
Alignment:
Q  45 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 127  Q
    ||||| |||| | ||||||||||||||||| |||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  18581349 ttctctttcacaatttcttcttgcaagtgtctatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 18581431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 38698462 - 38698380
Alignment:
Q  45 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 127  Q
    ||||| |||| | ||||||||||||||||| |||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  38698462 ttctctttcacaatttcttcttgcaagtgtatatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 38698380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 13072291 - 13072365
Alignment:
Q  45 ttctccttcatagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattc 119  Q
    ||||| |||| | ||||||||||||||||||||||||||| || |||||| || ||||| |||||||||||||||    
T  13072291 ttctctttcacaatttcttcttgcaagtgtttatcaattgcctgatttttatcaaatctcattctcaattcattc 13072365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 5276457 - 5276383
Alignment:
Q  53 catagtttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 127  Q
    |||| |||||| ||| ||||||| ||||||||| | |||||| || |||||||||||||| |||||| |||||||    
T  5276457 catactttctttttgtaagtgttcatcaattgtatgatttttatccaatcttattctcaaatcattcaaaatatt 5276383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 21206157 - 21206088
Alignment:
Q  58 tttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 127  Q
    |||||||| |||||||| |||||||||| | |||||| |||||||||||| |||||| ||| ||| ||||    
T  21206157 tttcttctagcaagtgtctatcaattgtttgatttttatctaatcttattttcaatttattacaagtatt 21206088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 41871058 - 41870989
Alignment:
Q  58 tttcttcttgcaagtgtttatcaattgtcttatttttgtctaatcttattctcaattcattccaaatatt 127  Q
    |||||||||| |||||| |||||||||||| |||||| || ||||| |||||||||||||||||| ||||    
T  41871058 tttcttcttgtaagtgtctatcaattgtctgatttttatcaaatctcattctcaattcattccaagtatt 41870989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 10380 - 10414
Alignment:
Q  51 ttcatagtttcttcttgcaagtgtttatcaattgt 85  Q
    |||||||||||||||||||||| ||||||||||||    
T  10380 ttcatagtttcttcttgcaagtatttatcaattgt 10414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University