View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_high_118 (Length: 305)

Name: NF15941_high_118
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_high_118
NF15941_high_118
[»] chr6 (14 HSPs)
chr6 (16-305)||(33495734-33496017)
chr6 (22-304)||(5258613-5258899)
chr6 (22-304)||(9706309-9706595)
chr6 (22-304)||(5631350-5631637)
chr6 (93-305)||(10100319-10100541)
chr6 (93-304)||(20428099-20428320)
chr6 (183-305)||(2689354-2689476)
chr6 (93-163)||(30670486-30670556)
chr6 (180-293)||(26291474-26291587)
chr6 (237-304)||(14030558-14030625)
chr6 (229-290)||(607903-607964)
chr6 (124-172)||(3632645-3632693)
chr6 (180-290)||(27790851-27790961)
chr6 (235-305)||(30679224-30679294)
[»] chr5 (23 HSPs)
chr5 (22-304)||(3394244-3394529)
chr5 (22-303)||(3301382-3301667)
chr5 (16-305)||(1274792-1275085)
chr5 (16-289)||(20318518-20318795)
chr5 (16-305)||(24178051-24178344)
chr5 (16-305)||(1288051-1288344)
chr5 (24-305)||(10638833-10639117)
chr5 (93-305)||(12492849-12493071)
chr5 (16-305)||(2075936-2076229)
chr5 (16-305)||(28977319-28977612)
chr5 (94-291)||(16347879-16348085)
chr5 (117-292)||(36200404-36200589)
chr5 (184-262)||(43423578-43423656)
chr5 (93-297)||(27302420-27302631)
chr5 (91-167)||(27526-27602)
chr5 (195-287)||(20077297-20077389)
chr5 (230-305)||(34272767-34272842)
chr5 (213-305)||(27622-27714)
chr5 (93-169)||(17341809-17341885)
chr5 (95-167)||(23979832-23979904)
chr5 (210-296)||(16779407-16779493)
chr5 (92-168)||(37124166-37124243)
chr5 (180-296)||(43558285-43558401)
[»] chr1 (22 HSPs)
chr1 (16-305)||(8671447-8671740)
chr1 (22-304)||(32083208-32083494)
chr1 (16-305)||(49347855-49348149)
chr1 (16-305)||(51601585-51601878)
chr1 (16-305)||(43240843-43241136)
chr1 (16-305)||(51441227-51441519)
chr1 (93-305)||(1210343-1210565)
chr1 (94-303)||(34827566-34827785)
chr1 (93-303)||(27445496-27445716)
chr1 (180-305)||(30202592-30202717)
chr1 (91-266)||(37463366-37463548)
chr1 (180-296)||(19936216-19936333)
chr1 (94-277)||(32066761-32066951)
chr1 (217-305)||(22089826-22089914)
chr1 (126-266)||(35828894-35829044)
chr1 (191-269)||(52739965-52740043)
chr1 (230-305)||(9592479-9592554)
chr1 (240-304)||(8391525-8391589)
chr1 (180-305)||(46226744-46226868)
chr1 (180-275)||(52640917-52641012)
chr1 (96-168)||(52641060-52641132)
chr1 (91-144)||(32405146-32405199)
[»] chr4 (30 HSPs)
chr4 (22-305)||(31960276-31960563)
chr4 (16-305)||(23906763-23907056)
chr4 (16-305)||(53707321-53707614)
chr4 (16-305)||(1777477-1777770)
chr4 (22-304)||(27450636-27450922)
chr4 (16-305)||(435756-436049)
chr4 (93-305)||(33226807-33227029)
chr4 (16-305)||(48174555-48174848)
chr4 (16-303)||(56374817-56375108)
chr4 (16-305)||(48622989-48623282)
chr4 (22-305)||(39707990-39708278)
chr4 (98-305)||(16002532-16002748)
chr4 (94-295)||(47265677-47265887)
chr4 (194-295)||(46583296-46583397)
chr4 (194-305)||(50286680-50286791)
chr4 (180-305)||(1211852-1211977)
chr4 (178-295)||(3273115-3273232)
chr4 (96-287)||(17666518-17666716)
chr4 (210-294)||(43433643-43433727)
chr4 (198-305)||(41009812-41009922)
chr4 (180-288)||(55578729-55578837)
chr4 (191-294)||(35690016-35690113)
chr4 (188-265)||(20917685-20917762)
chr4 (183-251)||(17667845-17667913)
chr4 (95-170)||(41427439-41427514)
chr4 (132-169)||(55768985-55769022)
chr4 (132-169)||(55833241-55833278)
chr4 (190-262)||(1629136-1629208)
chr4 (96-168)||(17667935-17668006)
chr4 (141-169)||(39754979-39755007)
[»] chr3 (21 HSPs)
chr3 (93-305)||(25190977-25191199)
chr3 (16-305)||(38849621-38849914)
chr3 (16-305)||(47542173-47542466)
chr3 (93-305)||(51448171-51448393)
chr3 (96-305)||(27917173-27917392)
chr3 (94-297)||(48221383-48221596)
chr3 (180-305)||(28245132-28245257)
chr3 (91-295)||(29817101-29817314)
chr3 (17-170)||(52138356-52138503)
chr3 (180-305)||(54425368-54425493)
chr3 (91-233)||(19757664-19757816)
chr3 (91-170)||(19736762-19736841)
chr3 (190-296)||(30345232-30345338)
chr3 (22-153)||(19757517-19757642)
chr3 (180-263)||(26490012-26490095)
chr3 (238-305)||(52138553-52138620)
chr3 (49-134)||(9258443-9258522)
chr3 (94-167)||(43111626-43111699)
chr3 (256-304)||(5168599-5168647)
chr3 (248-305)||(40674575-40674632)
chr3 (256-304)||(53519357-53519405)
[»] chr2 (22 HSPs)
chr2 (22-304)||(45368087-45368374)
chr2 (16-305)||(2610055-2610348)
chr2 (27-305)||(4807130-4807412)
chr2 (94-304)||(11992569-11992789)
chr2 (16-305)||(38453082-38453373)
chr2 (22-304)||(41763504-41763798)
chr2 (93-305)||(3865670-3865892)
chr2 (26-305)||(30743160-30743443)
chr2 (16-305)||(452084-452371)
chr2 (91-305)||(8180376-8180600)
chr2 (119-302)||(3244116-3244304)
chr2 (93-305)||(24584068-24584290)
chr2 (96-305)||(13148914-13149133)
chr2 (186-305)||(6238216-6238334)
chr2 (16-167)||(12475031-12475176)
chr2 (181-287)||(17581164-17581270)
chr2 (206-304)||(41197691-41197792)
chr2 (94-258)||(37281706-37281882)
chr2 (92-170)||(36038817-36038895)
chr2 (195-279)||(6465431-6465515)
chr2 (103-167)||(13592958-13593022)
chr2 (191-279)||(33594757-33594845)
[»] chr8 (27 HSPs)
chr8 (16-305)||(36565703-36565996)
chr8 (93-305)||(4032956-4033178)
chr8 (22-304)||(42854467-42854762)
chr8 (16-304)||(12492305-12492597)
chr8 (91-305)||(36544748-36544972)
chr8 (22-304)||(15215734-15216019)
chr8 (198-305)||(25439249-25439356)
chr8 (93-305)||(8879896-8880118)
chr8 (187-302)||(18124878-18124993)
chr8 (125-267)||(29735447-29735592)
chr8 (210-305)||(37077490-37077585)
chr8 (183-303)||(13589138-13589258)
chr8 (180-292)||(13984730-13984841)
chr8 (198-305)||(25299950-25300057)
chr8 (94-287)||(28300588-28300788)
chr8 (198-305)||(25288613-25288722)
chr8 (183-284)||(33830716-33830817)
chr8 (230-303)||(39946602-39946675)
chr8 (198-292)||(30113671-30113766)
chr8 (94-170)||(18849722-18849798)
chr8 (191-290)||(30578704-30578803)
chr8 (94-169)||(41444912-41444987)
chr8 (248-305)||(6510878-6510936)
chr8 (192-270)||(18849624-18849697)
chr8 (180-254)||(38667252-38667326)
chr8 (248-305)||(10824550-10824607)
chr8 (248-305)||(45231208-45231265)
[»] chr7 (22 HSPs)
chr7 (16-305)||(31004751-31005043)
chr7 (16-305)||(11593480-11593780)
chr7 (16-305)||(37616443-37616736)
chr7 (16-305)||(46356313-46356606)
chr7 (16-305)||(36651521-36651814)
chr7 (23-304)||(38606540-38606824)
chr7 (16-305)||(33350268-33350561)
chr7 (16-305)||(39906837-39907134)
chr7 (16-305)||(36869751-36870044)
chr7 (93-305)||(48918986-48919208)
chr7 (22-170)||(32630140-32630282)
chr7 (22-253)||(49028800-49029035)
chr7 (180-305)||(35906663-35906788)
chr7 (22-242)||(24177720-24177944)
chr7 (198-304)||(43281389-43281495)
chr7 (197-305)||(33072666-33072774)
chr7 (230-305)||(34869165-34869240)
chr7 (229-305)||(7272784-7272859)
chr7 (180-278)||(21517814-21517911)
chr7 (181-287)||(23087582-23087688)
chr7 (248-303)||(7189696-7189751)
chr7 (229-304)||(32630339-32630414)
[»] scaffold0113 (1 HSPs)
scaffold0113 (22-305)||(12060-12347)
[»] scaffold0018 (1 HSPs)
scaffold0018 (16-305)||(30995-31288)
[»] scaffold0570 (1 HSPs)
scaffold0570 (96-305)||(2732-2951)
[»] scaffold0024 (1 HSPs)
scaffold0024 (122-305)||(82348-82541)
[»] scaffold0045 (3 HSPs)
scaffold0045 (180-305)||(87071-87196)
scaffold0045 (91-168)||(88532-88609)
scaffold0045 (16-65)||(88636-88685)
[»] scaffold1493 (1 HSPs)
scaffold1493 (198-305)||(47-156)
[»] scaffold0171 (1 HSPs)
scaffold0171 (116-170)||(5813-5867)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 33495734 - 33496017
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||  ||||||||      |||||||||||||||||||||    
T  33495734 tgaacaggaggctagagacttggagtcaaaccttaaaagcgtatggtttccgcctgagtagaagcaagacaga------gtatatggaatgtaacttcat 33495827  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccctagttacacatcttgggtccatagtacaaaatgacggagaaatag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33495828 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccctagttacacatcttgggtccatagtacaaaataacggagaaatag 33495927  T
Q  216 aagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33495928 aagcatatgtaactcatcatattcaagctggatggttgaaatggagaagagtctcagatgttttgtgtgataagaaagtaccacttaagt 33496017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 5258899 - 5258613
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| ||||||||| || || |||||||||| ||| ||||||||||||  |||||| |      |||||||||||||||||||| ||||||    
T  5258899 ggaggctagagacctggaggcaagccttagaagcgtatggcttccgcctgagtagaagcaagacaaa------gtatatggaatgtaacttcagcaaaag 5258806  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacaca---------tcttgggtccatagtacaaaatgacggagaa 211  Q
    ||||||| ||||||||||||| |||||||||| |||||||||||||||| | ||||||||         |||||||||||||||||||||||||||||||    
T  5258805 gagaagtgggtctaccttggaagtgaaagttggagatcatatcataccccaagttacacagtttaaatatcttgggtccatagtacaaaatgacggagaa 5258706  T
Q  212 atagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    ||||||||  |||||  ||||| |||||||||||| ||||||| ||||||||||| ||||  |||||| || ||| ||||||||| |||||||    
T  5258705 atagaagctgatgtacatcatcgtattcaagctgggtggttgaaatggagaagagcctcatgtgttttttgcgatgagaaagtaccacttaag 5258613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 9706309 - 9706595
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| ||||||||| || || ||| |||||||| | ||||||||||||  ||||    ||  |||||||||||||||||||||| ||||||    
T  9706309 ggaggctagagacctggaggcaagccttagaagagtatggttcccgcctgagtagaagcaaga----tg--gagtatatggaatgtaacttcagcaaaag 9706402  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgacggagaa 211  Q
    ||||||| ||| |||||||||| ||||||||| |||||||||||||||| | |||||||         ||||||||||||| ||||||||||| ||||||    
T  9706403 gagaagtgggtataccttggagatgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccatggtacaaaatgatggagaa 9706502  T
Q  212 atagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    |||||||||  ||||| ||||| |||||||||||| ||||||| |||||||||||  |||| ||||||||| ||||||||||||| |||||||    
T  9706503 atagaagcaggtgtaaatcatcgtattcaagctgggtggttgaaatggagaagagcatcaggtgttttgtgcgataagaaagtaccacttaag 9706595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 5631350 - 5631637
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||| ||||| || |||||| || || ||| |||||||||| || |||||||||  |||||| |      |||||||||||||||||||| ||||||    
T  5631350 ggaggctggagacctgtaggcaagccttagaagagtatggtttccgcatgagtagaagcaagacaaa------gtatatggaatgtaacttcagcaaaag 5631443  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacaca----------tcttgggtccatagtacaaaatgacggaga 210  Q
    ||||||| ||||||||||| |||||||||||  |||||||||||||||| | |||||||           | ||||||||||||||||||||||||||||    
T  5631444 gagaagtgggtctaccttgcaggtgaaagttagagatcatatcataccccaagttacacggtttaaatatttttgggtccatagtacaaaatgacggaga 5631543  T
Q  211 aatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    |||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||||||||| | ||||||||| ||||||||||||| |||||||    
T  5631544 aatagaagcagatgtaaatcatcgtattcaagctgggtggttgaaatggagaagagtctcgggtgttttgtgcgataagaaagtaccacttaag 5631637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 93 - 305
Target Start/End: Complemental strand, 10100541 - 10100319
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atc 182  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||         |||    
T  10100541 gagtatatggaatgtaactttagcaaaatgagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 10100442  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    ||||||||||||||||||||| |||||||||||||||  || ||| ||||| |||||||||||| ||||||  ||||||||||| ||||  |||||||||    
T  10100441 ttgggtccatagtacaaaatgtcggagaaatagaagctgatataaatcatcgtattcaagctgggtggttggaatggagaagagcctcatgtgttttgtg 10100342  T
Q  283 tgataagaaagtactacttaagt 305  Q
     ||||||||||||| ||||||||    
T  10100341 agataagaaagtaccacttaagt 10100319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 93 - 304
Target Start/End: Complemental strand, 20428320 - 20428099
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacc-ctagttacac---------atc 182  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| | |||||| |         ||     
T  20428320 gagtatatggaatgtaacttcagcaaaaggagaattaggtctacctaggaggtgaaagttggagatcatatcataccacaagttacgcggtttaaatata 20428221  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    ||||||||| ||||||||| |||||| ||||||||||| |||||| ||||| ||| |||||||| ||||||| ||||||||||| ||| | |||||||||    
T  20428220 ttgggtccacagtacaaaacgacggaaaaatagaagcagatgtaaatcatcgtatccaagctgggtggttgaaatggagaagagcctcgggtgttttgtg 20428121  T
Q  283 tgataagaaagtactacttaag 304  Q
     ||||||||||||| |||||||    
T  20428120 cgataagaaagtaccacttaag 20428099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 305
Target Start/End: Original strand, 2689354 - 2689476
Alignment:
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    ||||||| ||||||||||| ||||||||||||||| || |||||| ||||| || |||||||||||| |||| ||||||||| | ||||  | |||||||    
T  2689354 ttgggtctatagtacaaaacgacggagaaatagaatcagatgtaaatcatcgtagtcaagctggatgattgaaatggagaagtgcctcatgtattttgtg 2689453  T
Q  283 tgataagaaagtactacttaagt 305  Q
    ||||||||||| |||||||||||    
T  2689454 tgataagaaagcactacttaagt 2689476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 30670486 - 30670556
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatat 163  Q
    |||||||| ||||||| ||| | ||||||||||||||||| |||||||||||||||||||| |||||||||    
T  30670486 gagtatatagaatgtatctttagcaaaaggagaagtaggtataccttggaggtgaaagttggagatcatat 30670556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 26291474 - 26291587
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    |||||| |||||||||| ||||||| ||||||||||||||||| | || ||| | |||||||| ||||||||||| ||| |||| |  ||||  | ||||    
T  26291474 atcttgagtccatagtagaaaatgatggagaaatagaagcatacgcaaatcaacgtattcaagttggatggttgaaatgtagaataacctcatgtatttt 26291573  T
Q  280 gtgtgataagaaag 293  Q
     |||||||||||||    
T  26291574 atgtgataagaaag 26291587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 14030558 - 14030625
Alignment:
Q  237 ttcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    ||||| |||| ||||||| |||||||| |||||||| ||||||||| ||||||||||||| |||||||    
T  14030558 ttcaaactgggtggttgaaatggagaatagtctcaggtgttttgtgcgataagaaagtaccacttaag 14030625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 607903 - 607964
Alignment:
Q  229 tcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataaga 290  Q
    ||||| |||||||||||| ||||||| ||||||||||| ||||| ||||||||| |||||||    
T  607903 tcatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataaga 607964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 3632645 - 3632693
Alignment:
Q  124 gaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta 172  Q
    ||||||| |||||||| ||||||||||||| ||||||||||||||||||    
T  3632645 gaagtagttctacctttgaggtgaaagttggagatcatatcatacccta 3632693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 27790851 - 27790961
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    ||||||| ||||||||||||||||||| | |||||||||||  | ||| |||||||| | ||| ||  ||||||| || |||||||| ||||  ||||||    
T  27790851 atcttggatccatagtacaaaatgacgcataaatagaagcaagtctaaatcatcataataaagttgagtggttgaaatagagaagagcctcaagtgtttt 27790950  T
Q  280 gtgtgataaga 290  Q
      |||||||||    
T  27790951 acgtgataaga 27790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 30679224 - 30679294
Alignment:
Q  235 tattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    |||||||| ||| ||||||| || |||||||| ||||| ||||||| | ||||||||||||| || |||||    
T  30679224 tattcaagttgggtggttgaaatagagaagaggctcaggtgttttgagcgataagaaagtaccacataagt 30679294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 3394244 - 3394529
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| ||||||||| || || |||||||||||||| ||||||||||||  ||||||||      ||||||||||||||| |||| ||||||    
T  3394244 ggaggctagagacctggaggcaagccttagaagcgtatggtttccgcctgagtagaagcaagacaga------gtatatggaatgtaa-ttcagcaaaag 3394336  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgacggagaa 211  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||||||||||||||||||||||||||||    
T  3394337 gagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccatagtacaaaatgacggagaa 3394436  T
Q  212 atagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    ||||||||| |||||| ||||| |||||||||||| ||||||| ||||||| ||| ||||| ||||||||| ||||||||||||| |||||||    
T  3394437 atagaagcagatgtaaatcatcgtattcaagctgggtggttgaaatggagatgagcctcaggtgttttgtgcgataagaaagtaccacttaag 3394529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 3301382 - 3301667
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| ||||||||| || || ||| |||||||||| ||||||||||||  ||||| ||      |||||||||||||||||||| ||||||    
T  3301382 ggaggctagagacctggaggcaagccttagaagagtatggtttccgcctgagtagaagcaagacgga------gtatatggaatgtaacttcagcaaaag 3301475  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgacggagaa 211  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||| | |||||||         |||||||||||||||||| |||||| ||||||    
T  3301476 gagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccatagtaccaaatgaaggagaa 3301575  T
Q  212 atagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaa 303  Q
    ||||||||| ||| || ||||| |||||||||||| ||||||| || |||| ||| ||||| ||||||||| ||||||||||||| ||||||    
T  3301576 atagaagcagatgcaaatcatcgtattcaagctgggtggttgaaatagagatgagcctcaggtgttttgtgcgataagaaagtaccacttaa 3301667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 1274792 - 1275085
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    |||||| |||||||||||| ||||||||| || || |||||||||| ||| |  |||||||||  ||||| ||      ||||||||||||||||||||     
T  1274792 tgaacatgaggctagagacctggaggcaagccttagaagcgtatggattccggttgagtagaagcaagacgga------gtatatggaatgtaacttcag 1274885  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    | |||||||||||||||||||||||||| ||||||||| |||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  1274886 cgaaaggagaagtaggtctaccttggagatgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgac 1274985  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||| ||||||| || || ||||||||| ||||||||||||| ||||||||    
T  1274986 ggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatgaagaagagcctaaggtgttttgtgcgataagaaagtaccacttaagt 1275085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 20318518 - 20318795
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  20318518 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcag 20318611  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  |||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  20318612 cggaaggagaagtagttctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgac 20318711  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataag 289  Q
    ||||||||||||||| ||||||  ||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||||||    
T  20318712 ggagaaatagaagcagatgtaagccatcatattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataag 20318795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 24178051 - 24178344
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| || |||||| || || ||| |||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  24178051 tgaacgggaggctagagacctgaaggcaagccttagaagtgtatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcag 24178144  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  |||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||         ||||||||||| | ||||||||||||    
T  24178145 cggaaggagaagtaggtctaccttggaagtgaaagttggagatcatatcataccctaagttacacggtttaaagatcttgggtccttcgtacaaaatgac 24178244  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  ||||||||||||| ||| ||||||| ||||||||||| ||||  ||||||||| ||||||||||||| ||||||||    
T  24178245 ggagaaatagaagcagatgtaagccatcatattcaagttgggtggttgaaatggagaagagcctcaagtgttttgtgcgataagaaagtaccacttaagt 24178344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 1288344 - 1288051
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| |||| |||||||| ||||| ||| || || |||||||||| |||||| |||||||||  ||||| ||      ||||||||||||||||||||     
T  1288344 tgaacgggagactagagacctggagacaagccttagaagcgtatggattctgcttgagtagaagcaagacgga------gtatatggaatgtaacttcag 1288251  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||         |||||| |||| | ||||||||||||    
T  1288250 cggaaggagaagtaagtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgagtccttcgtacaaaatgac 1288151  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||| |||||||| ||||||||||| ||||||||||| ||||  ||||||||| ||||||||||||| | ||||||    
T  1288150 ggagaaatagaagcagatgtaagccatcgtattcaagttggatggttgaaatggagaagagcctcatgtgttttgtgcgataagaaagtaccatttaagt 1288051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 305
Target Start/End: Original strand, 10638833 - 10639117
Alignment:
Q  24 aggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaagga 123  Q
    ||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||    |||||    
T  10638833 aggctagagacctggaggcaagccttagaagcgtatggattc-gcttgagtagaagaaagacgga------gtatatggaatgtaacttcagtggaagga 10638925  T
Q  124 gaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgacggagaaat 213  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| | |||||||         ||||||||||| | ||||||||||||||||||||    
T  10638926 gaagtaggtctaccttggaggtgaaagttggaaatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaat 10639025  T
Q  214 agaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||| || || ||||||||| ||||||||||||| ||||||||    
T  10639026 agaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagccttaggtgttttgtgcgataagaaagtaccacttaagt 10639117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 93 - 305
Target Start/End: Complemental strand, 12493071 - 12492849
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atc 182  Q
    |||||||||||||||||||||| |  |||||||||||| |||||||||||||| ||||||| |||||||||||||||| | |||||||         |||    
T  12493071 gagtatatggaatgtaacttcagcggaaggagaagtagctctaccttggaggtaaaagttggagatcatatcataccccaagttacacggtttaaatatc 12492972  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||| ||||| |||||||||    
T  12492971 ttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtg 12492872  T
Q  283 tgataagaaagtactacttaagt 305  Q
      |||||||||||| ||||||||    
T  12492871 caataagaaagtaccacttaagt 12492849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 2076229 - 2075936
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||  ||||||||| || || |||||||||| ||| || |||||||||  ||||||||      ||| ||||||||||||||||     
T  2076229 tgaacgggaggctagagagctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacaga------gtacatggaatgtaacttcag 2076136  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||| || |||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  2076135 cggaaggagaagcagttctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgac 2076036  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
     |||||||||||||| ||||||  |||| |||||||| ||| ||||||| ||| ||||||| ||||| |||||||||  |||||||||||| ||||||||    
T  2076035 agagaaatagaagcagatgtaagccatcgtattcaagttgggtggttgaaatgaagaagagcctcaggtgttttgtgcaataagaaagtaccacttaagt 2075936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 28977612 - 28977319
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| |||||||| || | ||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  28977612 tgaacgggaggctataggcctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcaa 28977519  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||||||||||||||| ||||||||||||| |||||||||||||||| | || ||||         ||||||||||| | ||||||||||||    
T  28977518 cggaaggagaagtaggtctaccttagaggtgaaagttggagatcatatcataccccaagtcacacggtttaaatatcttgggtccttcgtacaaaatgac 28977419  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    |||| |||||||| | ||||||  |||| |||||||||||| ||||||| ||||||||||| ||| | ||||||||| ||||||||||||| ||||||||    
T  28977418 ggagtaatagaagtagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcgggtgttttgtgcgataagaaagtaccacttaagt 28977319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 94 - 291
Target Start/End: Complemental strand, 16348085 - 16347879
Alignment:
Q  94 agtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttacac---------atct 183  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||         ||||    
T  16348085 agtatatgaaatgtaacttcagcaaaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatct 16347986  T
Q  184 tgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgt 283  Q
    || |||||||||||||||||||||||||||| |||| ||||||| ||||| |||||||| | | ||||||| ||||||||||| ||||| |||||||||     
T  16347985 tgtgtccatagtacaaaatgacggagaaataaaagcgtatgtaaatcatcgtattcaag-taggtggttgaaatggagaagagcctcaggtgttttgtgc 16347887  T
Q  284 gataagaa 291  Q
     |||||||    
T  16347886 aataagaa 16347879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 117 - 292
Target Start/End: Original strand, 36200404 - 36200589
Alignment:
Q  117 aaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacc-ctagttacac---------atcttgggtccatagtacaaaatgacg 206  Q
    |||||||||||||| |||||  ||||||||||||| | || |||||||||||| | ||||||||         || |||||| ||||||||||||||||     
T  36200404 aaaaggagaagtagttctactatggaggtgaaagtgggaggtcatatcatacctcaagttacaccgtttaaatattttgggttcatagtacaaaatgaca 36200503  T
Q  207 gagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaa 292  Q
     |||||||| ||||||||||| |||||||||| ||| ||| ||||||| ||||||||||| ||||  |||||| ||||||||||||    
T  36200504 tagaaatagtagcatatgtaaatcatcatatttaagttgggtggttgaaatggagaagagactcatgtgttttatgtgataagaaa 36200589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 43423656 - 43423578
Alignment:
Q  184 tgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggaga 262  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||| ||||||| |||||||    
T  43423656 tgggtccgtagtacaaaatgacggagaaacagaagcagatgtaaatcatcatattcaagttgggtggttgaaatggaga 43423578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 297
Target Start/End: Complemental strand, 27302631 - 27302420
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacc-----cta-----gttacacatc 182  Q
    |||||||||||||||||||||| |||||||  |||||| ||||||||| ||||||  |||| |||||||||||||||     |||      ||| | |||    
T  27302631 gagtatatggaatgtaacttcaacaaaaggtaaagtagttctaccttgaaggtgagtgttggagatcatatcatacctcaaactacacggtttaaatatc 27302532  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    ||| ||||||| ||||||| | ||||||||||||||   |||||| ||||| |||||||| ||  ||||||| ||||| ||||| |  | ||| ||| ||    
T  27302531 ttgtgtccataatacaaaacggcggagaaatagaag---atgtaaatcatcgtattcaagttgagtggttgaaatggaaaagagccatatatgctttatg 27302435  T
Q  283 tgataagaaagtact 297  Q
    |||||||||||||||    
T  27302434 tgataagaaagtact 27302420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 27526 - 27602
Alignment:
Q  91 cagagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata 167  Q
    ||||||||| |||||||||||||| ||| ||| ||||||| | | |||||||||||||||||| |||||||||||||    
T  27526 cagagtatagggaatgtaacttcaacaataggcgaagtagttatgccttggaggtgaaagttggagatcatatcata 27602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 20077389 - 20077297
Alignment:
Q  195 tacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgata 287  Q
    |||||||||||||||||||  ||||| ||| || ||||||| |||| | ||||||||||| ||||||||||| ||||| |||||| |||||||    
T  20077389 tacaaaatgacggagaaattaaagcagatgcaaatcatcattttcaggttggatggttgaaatggagaagagcctcaggtgttttatgtgata 20077297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 34272767 - 34272842
Alignment:
Q  230 catcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    |||| |||||||| ||| ||||| | ||||||||||| ||||| ||||||||| ||||||||||||| ||||||||    
T  34272767 catcgtattcaagttgggtggttaaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagt 34272842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 27622 - 27714
Alignment:
Q  213 tagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||| || |||||| |||||||||||||| ||| |||| || || ||||||||||||   ||||||  ||||||||||||||| ||||||||    
T  27622 tagaatcaaatgtaaatcatcatattcaagttgggtggtggaaatagagaagagtctcgagtgttttacgtgataagaaagtaccacttaagt 27714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 17341885 - 17341809
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacc 169  Q
    |||||||||||||||||||| |  ||||||  || | | ||||||||||||||| |||||| |||||||||||||||    
T  17341885 gagtatatggaatgtaactttagaaaaaggccaaatggttctaccttggaggtggaagttggagatcatatcatacc 17341809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 23979832 - 23979904
Alignment:
Q  95 gtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata 167  Q
    ||||||| |||||||||||| ||||||   |||||| || ||||| ||||||||||||| |||||||||||||    
T  23979832 gtatatgtaatgtaacttcaacaaaagacaaagtagttcaaccttagaggtgaaagttggagatcatatcata 23979904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 16779407 - 16779493
Alignment:
Q  210 aaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtac 296  Q
    ||||||||  ||||||||  ||||| ||||||  ||  ||||||| ||||||||||| |||||||||||| ||||||| ||||||||    
T  16779407 aaatagaaatatatgtaaaccatcaaattcaatttgagtggttgaaatggagaagagactcagatgttttatgtgatacgaaagtac 16779493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 37124166 - 37124243
Alignment:
Q  92 agagtatatggaatgtaacttcatcaaaag-gagaagtaggtctaccttggaggtgaaagttgaagatcatatcatac 168  Q
    |||||||||||||||||| |||| |||||  | ||||||  |||||||| ||||||||||||| |||||| |||||||    
T  37124166 agagtatatggaatgtaatttcagcaaaaatgtgaagtatttctaccttagaggtgaaagttggagatcaaatcatac 37124243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 296
Target Start/End: Complemental strand, 43558401 - 43558285
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    ||||| ||||||| ||||||||  || |||||||||||||| |||||| |||||  |||||||| || | || || |||||||| || || |  ||||||    
T  43558401 atcttaggtccattgtacaaaaccacagagaaatagaagcagatgtaaatcatcgaattcaagcagggtagtggaaatggagaatagcctaaagtgtttt 43558302  T
Q  280 gtgtgataagaaagtac 296  Q
     |||||||  |||||||    
T  43558301 atgtgatactaaagtac 43558285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 8671447 - 8671740
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||||||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  8671447 tgaacgggaggctagagacttggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcag 8671540  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||         ||||||||||| | ||||||||||||    
T  8671541 cagaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccctaagttacacggtttaaatatcttgggtccttcgtacaaaatgac 8671640  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    | ||||||||||||| |||||| ||||| |||||||||||| ||||| | ||||||||||| ||||| ||||||||| ||||||||||||| ||||||||    
T  8671641 gaagaaatagaagcagatgtaagtcatcgtattcaagctgggtggttaaaatggagaagagactcaggtgttttgtgcgataagaaagtaccacttaagt 8671740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 32083494 - 32083208
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| ||||||||| ||  | |||||||||||||| ||||||||||||  ||||| ||      |||||||||||||||||||| ||||||    
T  32083494 ggaggctagagacctggaggcaagcctcagaagcgtatggtttccgcctgagtagaagcaagacgga------gtatatggaatgtaacttcagcaaaag 32083401  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacaca---------tcttgggtccatagtacaaaatgacggagaa 211  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||| | ||| ||||         |||||||||||||||||||||||||||||||    
T  32083400 gagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagttgcacaatttaaatatcttgggtccatagtacaaaatgacggagaa 32083301  T
Q  212 atagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    ||||| ||| |||||| ||||| |||||||||||| ||||||| ||||||||||| ||||| |||| | || ||||||||||||| |||||||    
T  32083300 atagaggcaaatgtaaatcatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttctatgcgataagaaagtaccacttaag 32083208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 49348149 - 49347855
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| |||||| |||||||||  ||||| ||      |||||| |||||||||||||     
T  49348149 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattctgcttgagtagaagcaagacgga------gtatatcgaatgtaacttcag 49348056  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac----------atcttgggtccatagtacaaaatga 204  Q
    |  ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||          ||||||||||| | |||||||||||    
T  49348055 cggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacactggtttaaatatcttgggtccttcgtacaaaatga 49347956  T
Q  205 cggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    ||||||||||||||||  |||||  |||| |||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||||| |||||||    
T  49347955 cggagaaatagaagcaggtgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaag 49347856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 51601585 - 51601878
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| ||| || |||||| ||  ||||| ||      ||||||||||||||||||||     
T  51601585 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtaaaagcaagacgga------gtatatggaatgtaacttcag 51601678  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  51601679 cggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgac 51601778  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||| |||||||||||| |||| || || |||||||||||||| ||||||||  |||||||||||||  |||||||    
T  51601779 ggagaaatagaagcagatgtaagccatcgtattcaagctgggtggtggaaatagagaagagtctcaggtgttttgttcgataagaaagtaccccttaagt 51601878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 43241136 - 43240843
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| |||||| || || || |||||||||| |||  | |||||||||  ||||| ||      ||||||||||||||||||||     
T  43241136 tgaacgggaggctagagacctggaggtaagccttagaagcgtatggattccacttgagtagaagcaagacgga------gtatatggaatgtaacttcag 43241043  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  |||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||| ||| | ||||||||||||    
T  43241042 cggaaggagaagtagatctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttggatccttcgtacaaaatgac 43240943  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    |||||||| |||||| ||||||  ||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||  |||||||||||| ||||||||    
T  43240942 ggagaaatggaagcagatgtaagccatcatattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcaataagaaagtaccacttaagt 43240843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 51441519 - 51441227
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || ||| |||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  51441519 tgaacgggaggctagagacctggaggcaagccttagaagagtatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcag 51441426  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacaca---------tcttgggtccatagtacaaaatgac 205  Q
    |  |||||||||||||||||||||| |||||||||||| |||||||||||||||| | ||||||||         |||||||||  |  |||||||||||    
T  51441425 cggaaggagaagtaggtctaccttgaaggtgaaagttggagatcatatcataccccaagttacacagtttaaatatcttgggtctttcatacaaaatgac 51441326  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| || |||  ||||||||||||||||| ||||||| ||||||||||| ||||  |||||| || ||||||||||||| ||||||||    
T  51441325 ggagaaatagaagcagatctaagccatcatattcaagctgggtggttgaaatggagaagagcctcaagtgtttt-tgcgataagaaagtaccacttaagt 51441227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 93 - 305
Target Start/End: Original strand, 1210343 - 1210565
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttacac---------atc 182  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||         |||    
T  1210343 gagtatatggaatgtaacttcagcggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacagtttaaatatc 1210442  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    |||||||  | ||||||||||| ||||||||| ||||| ||||||  |||| |||||||||||| ||||||| ||| ||||||| || || |||||||||    
T  1210443 ttgggtctttcgtacaaaatgatggagaaataaaagcagatgtaagccatcgtattcaagctgggtggttgaaatgaagaagagcctgaggtgttttgtg 1210542  T
Q  283 tgataagaaagtactacttaagt 305  Q
     ||||||||||||| ||||||||    
T  1210543 cgataagaaagtaccacttaagt 1210565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 94 - 303
Target Start/End: Complemental strand, 34827785 - 34827566
Alignment:
Q  94 agtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atct 183  Q
    |||||||||||||||||||||||||||| |||||| |  | |   ||||||||||||| | |||||||||||||||||| ||||||          ||||    
T  34827785 agtatatggaatgtaacttcatcaaaagaagaagtggtcccatgatggaggtgaaagtgggagatcatatcataccctaagttacaaggtttaaatatct 34827686  T
Q  184 tgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgt 283  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| || |||||||| ||||||||||| ||||  |||||| |||    
T  34827685 tgggtccatagtacaaaatgacggagaaatagaagcatatgtaaatcattgtattcaagttgaatggttgaaatggagaagagcctcatgtgttttatgt 34827586  T
Q  284 gataagaaagtactacttaa 303  Q
    |||||||||||||| |||||    
T  34827585 gataagaaagtactgcttaa 34827566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 303
Target Start/End: Original strand, 27445496 - 27445716
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atc 182  Q
    |||||||||||||||||||| |   |||| |||||||| | ||||||| |||||||||||| ||||| |||||||||| | |||||||         ||     
T  27445496 gagtatatggaatgtaactttagtcaaagaagaagtagctttaccttgcaggtgaaagttggagatcttatcataccccaagttacacggtttaattatg 27445595  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcaga-tgttttgt 281  Q
    |||||||||||||||||||||| ||||||||||||||| |||||| ||||| |||||||| ||| ||||||| |||||||||||| || || |||||| |    
T  27445596 ttgggtccatagtacaaaatgatggagaaatagaagcagatgtaaatcatcgtattcaagttggttggttgaaatggagaagagt-tccgagtgttttat 27445694  T
Q  282 gtgataagaaagtactacttaa 303  Q
    ||||||||||||||| ||||||    
T  27445695 gtgataagaaagtaccacttaa 27445716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 30202717 - 30202592
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||  |||| ||||||||| || ||||||| ||||||||||| ||||| ||||||    
T  30202717 atcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcgtattcaagccgggtggttgaaatggagaagagcctcaggtgtttt 30202618  T
Q  280 gtgtgataagaaagtactacttaagt 305  Q
    ||| ||||||||||||| ||||||||    
T  30202617 gtgcgataagaaagtaccacttaagt 30202592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 266
Target Start/End: Complemental strand, 37463548 - 37463366
Alignment:
Q  91 cagagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatac-cctagttacaca--------- 180  Q
    |||||||||||||||||||||||| ||||||  | |||   |||||||||||||||||||||| |||||||||||||| || |||||||||             
T  37463548 cagagtatatggaatgtaacttcagcaaaagccggagt---tctaccttggaggtgaaagttggagatcatatcatactccgagttacacagtttaaata 37463452  T
Q  181 tcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagag 266  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||  ||||  |||| ||||| | ||||||| |||||||||||    
T  37463451 tcttgagtccatagtacaaaatgacggagaaatagaagcagatgtatatcattgtatttaagctaggtggttgatatggagaagag 37463366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 180 - 296
Target Start/End: Original strand, 19936216 - 19936333
Alignment:
Q  180 atcttgggtccatagtacaaaa-tgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttt 278  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||||  ||||  |||||    
T  19936216 atcttgggtccataatacaaaaatgaaggagaaatagaagcatatgtaaatcatcgtattcaagctgggtggttgaaatggataagaacctcaagtgttt 19936315  T
Q  279 tgtgtgataagaaagtac 296  Q
    | ||||||||||||||||    
T  19936316 tatgtgataagaaagtac 19936333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 94 - 277
Target Start/End: Complemental strand, 32066951 - 32066761
Alignment:
Q  94 agtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccctagttacaca---------tctt 184  Q
    |||||||| ||||||| || | ||||||| ||||||| |||||||| ||||||||| ||| ||||||||||||||   |||||||||         | ||    
T  32066951 agtatatgtaatgtaattttagcaaaaggtgaagtagttctaccttagaggtgaaaattggagatcatatcataca--agttacacagtttaaatatttt 32066854  T
Q  185 gggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtt 277  Q
    |||| |||||||||||||||| |||||||| ||||| |||||| ||||| |||||||| ||||||||| | ||||||||||| ||||| ||||    
T  32066853 gggttcatagtacaaaatgacagagaaataaaagcaaatgtaaatcatcgtattcaagttggatggttaaaatggagaagagcctcaggtgtt 32066761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 22089826 - 22089914
Alignment:
Q  217 agcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    |||| |||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||  |||||||| ||| ||||||||    
T  22089826 agcagatgtaagtcatcgtattcaagctgggtggttgaaatggagaagagtctcagatgttttgtgcaataagaaaataccacttaagt 22089914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 126 - 266
Target Start/End: Complemental strand, 35829044 - 35828894
Alignment:
Q  126 agtaggtctaccttggaggtgaaagttgaagatcatatcatacc-ctagttac---------acatcttgggtccatagtacaaaatgacggagaaatag 215  Q
    ||||| ||||||||||||||||||| |  ||||||||||||||| | ||||||         |||||||||||||||||||||||  |||||||||||||    
T  35829044 agtagttctaccttggaggtgaaagctagagatcatatcataccacaagttacgctgcttaaacatcttgggtccatagtacaaagcgacggagaaatag 35828945  T
Q  216 aagcatatgtaactcatcatattcaagctggatggttgagatggagaagag 266  Q
    |||||||||||| |||||  |||| | |||  ||||||| ||||| |||||    
T  35828944 aagcatatgtaaatcatcgaattcgatctgtgtggttgaaatggaaaagag 35828894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 191 - 269
Target Start/End: Complemental strand, 52740043 - 52739965
Alignment:
Q  191 atagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtct 269  Q
    |||||||||| ||||||||||||||||| | |||||| ||||| || ||||| ||||||||||| ||||||||||||||    
T  52740043 atagtacaaagtgacggagaaatagaagtagatgtaagtcatcttactcaagttggatggttgaaatggagaagagtct 52739965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 9592479 - 9592554
Alignment:
Q  230 catcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    |||| |||||||| ||| ||||||| ||||||||||||||| | ||||||||| ||||||||||||| ||||||||    
T  9592479 catcgtattcaagttgggtggttgaaatggagaagagtctcgggtgttttgtgcgataagaaagtaccacttaagt 9592554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 8391525 - 8391589
Alignment:
Q  240 aagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    ||||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||||| |||||||    
T  8391525 aagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaag 8391589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 46226868 - 46226744
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    |||||| | |||| ||||||||||| ||||||| | ||||| |||||| | ||  |||||||| ||||||||||| |||||||||||  |||  ||||||    
T  46226868 atcttgtggccattgtacaaaatgatggagaaacaaaagcagatgtaaat-attgtattcaagttggatggttgaaatggagaagagcatcaagtgtttt 46226770  T
Q  280 gtgtgataagaaagtactacttaagt 305  Q
     |||| |||||||||| | |||||||    
T  46226769 atgtgctaagaaagtagtgcttaagt 46226744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 275
Target Start/End: Complemental strand, 52641012 - 52640917
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatg 275  Q
    |||||||||  || |||||||||||| |||| ||| |||||||||||| | ||| |||||||| || || ||||| ||| ||||||| ||||||||    
T  52641012 atcttgggtttatggtacaaaatgacagagagataaaagcatatgtaaattatcgtattcaagttgaattgttgaaatgaagaagagcctcagatg 52640917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 52641132 - 52641060
Alignment:
Q  96 tatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatac 168  Q
    |||||| | ||||| ||||  |||||| ||||||| || ||||| ||||||||||||| ||||||||||||||    
T  52641132 tatatgtagtgtaatttcaataaaaggcgaagtagttcgaccttagaggtgaaagttggagatcatatcatac 52641060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 32405199 - 32405146
Alignment:
Q  91 cagagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggagg 144  Q
    ||||||||||||||||||| |||| |||||||  |||||| |||||||| ||||    
T  32405199 cagagtatatggaatgtaatttcagcaaaaggcaaagtagttctaccttagagg 32405146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 305
Target Start/End: Complemental strand, 31960563 - 31960276
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  ||||||||      |||||||||||||||||||| |  |||    
T  31960563 ggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacaga------gtatatggaatgtaacttcagcggaag 31960470  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccctagtt-acac---------atcttgggtccatagtacaaaatgacggagaa 211  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| | || ||||         ||||||||||| | ||||||||||||||||||    
T  31960469 gagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaatttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaa 31960370  T
Q  212 atagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||| ||||||  ||||||||||||||||| ||||||| ||||||||||| |||| |||||||||| ||||||||||||| ||||||||    
T  31960369 atagaagcagatgtaagccatcatattcaagctgggtggttgaaatggagaagagcctcatatgttttgtgcgataagaaagtaccacttaagt 31960276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 23907056 - 23906763
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  23907056 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcaa 23906963  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  23906962 cggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgac 23906863  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||||||    
T  23906862 ggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagt 23906763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 53707321 - 53707614
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      |||||| |||||||||||||     
T  53707321 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtatatcgaatgtaacttcag 53707414  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  53707415 tggaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccccaagttacacggtctaaatatcttgggtccttcgtacaaaatgac 53707514  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  53707515 ggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagactcagatgttttgtgcgataagaaagtaccacttaagt 53707614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 1777770 - 1777477
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| |||||||||||| || |||||||||| ||| || |||||||||  || || ||      ||||||||||||||||||||     
T  1777770 tgaacgggaggctagagacctggaggcaaaccttagaagcgtatggattccgcttgagtagaagcaatacgga------gtatatggaatgtaacttcag 1777677  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  1777676 cggaaggagaagtaggtctaccttggaggtgaaagttggaaatcatatcataccccaagttacacgttttaaatatcttgggtccttcgtacaaaatgac 1777577  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
     |||||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||||||    
T  1777576 agagaaatagaagcaaatgtaagtcatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagt 1777477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 27450922 - 27450636
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| | ||||||| || || |||||||||||||| || |||||||||  ||||| ||      |||| ||||||||||||||| ||||||    
T  27450922 ggaggctagagacctcgaggcaagccttagaagcgtatggtttccgcttgagtagaagcaagacgga------gtatttggaatgtaacttcagcaaaag 27450829  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacaca---------tcttgggtccatagtacaaaatgacggagaa 211  Q
    ||||||| ||| |||||||||||||||||||| |||||||||||||||| | ||||||||         ||||||||||||||| |||||||| ||||||    
T  27450828 gagaagtgggtataccttggaggtgaaagttggagatcatatcataccccaagttacacagtttacatatcttgggtccatagtgcaaaatgatggagaa 27450729  T
Q  212 atagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    ||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||||| ||||  ||||||||| ||||||||||||| |||||||    
T  27450728 atagaagcagatgtaaatcatcgtattcaagctgggtggttgaaatggagaagagcctcaagtgttttgtgcgataagaaagtaccacttaag 27450636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 435756 - 436049
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  | ||| ||      ||||||||||||||||||||     
T  435756 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcacgacgga------gtatatggaatgtaacttcag 435849  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||||||| | ||| ||||||||    
T  435850 cggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtataaaatgac 435949  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| |||||| ||||| |||||||||||  ||||||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||||||    
T  435950 ggagaaatagaagcagatgtaagtcatcgtattcaagctgagtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagt 436049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 93 - 305
Target Start/End: Original strand, 33226807 - 33227029
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atc 182  Q
    |||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||         |||    
T  33226807 gagtatatggaatgtaacttcagcggaaggacaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 33226906  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||     
T  33226907 ttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcatattcaagctgggtggttgaaatggagaagagtctcaggtgttttgta 33227006  T
Q  283 tgataagaaagtactacttaagt 305  Q
     ||||||||||||| ||||||||    
T  33227007 cgataagaaagtaccacttaagt 33227029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 48174848 - 48174555
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||  ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  48174848 tgaacgggaggctagagacctggaggcaagccttagaagcgtatgaattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcag 48174755  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||||||| | ||||||| ||||    
T  48174754 cggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaagtgac 48174655  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||| |||||||||| | ||||||| ||||||||||| ||||| |||||||||  |||||||||||| ||||||||    
T  48174654 ggagaaatagaagcagatgtaagccatcgtattcaagctaggtggttgaaatggagaagagcctcaggtgttttgtgcaataagaaagtaccacttaagt 48174555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 56374817 - 56375108
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || ||| |||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  56374817 tgaacgggaggctagagacctggaggcaagccttagaagtgtatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcag 56374910  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||||||||||||||||||||||||||||| ||| |||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  56374911 cggaaggagaagtaggtctaccttggaggtgaaagttggagagcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgac 56375010  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaa 303  Q
    ||||||||||||||| || |||  |||| |||||||||||| ||||||| || |||||||| ||||| ||||||||| ||||||||||||| ||||||    
T  56375011 ggagaaatagaagcagatataagccatcgtattcaagctgggtggttgaaattgagaagagcctcaggtgttttgtgcgataagaaagtaccacttaa 56375108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 48623282 - 48622989
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| |||||||| |||  ||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  48623282 tgaacgggaggctatagatctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcag 48623189  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccctag-ttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |  ||||||         ||||||||||| | ||||||||||||    
T  48623188 cggaaggagaagtaggtctaccttggaggtgaaagttggagagcatatcataccccaaattacacgatttaaatatcttgggtccttcgtacaaaatgac 48623089  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||| |||||||||||| ||||||| |||||||| || ||||| ||||||||| ||||||||||||| ||||||||    
T  48623088 ggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaaaagcctcaggtgttttgtgcgataagaaagtaccacttaagt 48622989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 22 - 305
Target Start/End: Original strand, 39707990 - 39708278
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| ||| | ||| || || |||||||||||||||||||||||||||  ||||| ||      ||||||||||| |||||||| ||||||    
T  39707990 ggaggctagagacatggtgacaagccttagaagcgtatggtttctgcctgagtagaagcaagacgga------gtatatggaatataacttcagcaaaag 39708083  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacc-ctagttacac---------atcttgggtccatagtacaaaatgacggagaa 211  Q
    ||||| |||||||| ||||||||||||| ||| ||||||||| ||||| | |||||  |         |||||||||| |||||||||||||||||||||    
T  39708084 gagaattaggtctatcttggaggtgaaatttggagatcatattatacctcaagttatgcggtttaaatatcttgggtcgatagtacaaaatgacggagaa 39708183  T
Q  212 atagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagat-gttttgtgtgataagaaagtactacttaagt 305  Q
    |||||||||  ||||| || || |||||||||||||||||||| ||||| ||||| || || | ||||| |||||||||||||||| ||||||||    
T  39708184 atagaagcaggtgtaaatcctcgtattcaagctggatggttgaaatggataagagccttaggtggttttttgtgataagaaagtaccacttaagt 39708278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 305
Target Start/End: Original strand, 16002532 - 16002748
Alignment:
Q  98 tatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccctag-ttacac--------atcttgggt 188  Q
    |||||||| |||||| | |||||||||||||  ||||||||||||||| ||||||| | |||||||||||||| |  ||||||        ||||||| |    
T  16002532 tatggaatataactttagcaaaaggagaagttagtctaccttggaggtaaaagttggaaatcatatcataccccaaattacacggtttaaaatcttggtt 16002631  T
Q  189 ccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataa 288  Q
    |||||||||||||||||||||| ||||||||| |||||| ||||| |||| ||||||  ||||||| || |||||||| ||||| |||||||||||||||    
T  16002632 ccatagtacaaaatgacggagacatagaagcagatgtaaatcatcgtatttaagctgagtggttgaaattgagaagagcctcaggtgttttgtgtgataa 16002731  T
Q  289 gaaagtactacttaagt 305  Q
    |||||||| ||||||||    
T  16002732 gaaagtaccacttaagt 16002748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 94 - 295
Target Start/End: Complemental strand, 47265887 - 47265677
Alignment:
Q  94 agtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccc---------tag-ttacacatct 183  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||         ||| ||| | ||||    
T  47265887 agtatatgaaatgtaacttcagcaaaaggagaagtaggtctaccttggaggtgaaagttggaggtcatatcataccccaagttacatagtttaaatatct 47265788  T
Q  184 tgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgt 283  Q
    ||| ||||||||| ||||||||||||||||||||||| ||||||  |||| | |||||||||| || |||| ||| ||||||| || || |||||||||     
T  47265787 tggatccatagtataaaatgacggagaaatagaagcaaatgtaagccatcgt-ttcaagctgggtgattgaaatgaagaagagccttaggtgttttgtgc 47265689  T
Q  284 gataagaaagta 295  Q
    ||||||||||||    
T  47265688 gataagaaagta 47265677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 46583397 - 46583296
Alignment:
Q  194 gtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaag 293  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||| ||||||||||| ||||| | ||||||| ||||||||||    
T  46583397 gtacaaaatgacggagaaatagaagcagatgtaagccatcatattcaagctgggtggttgaaatggagaagagcctcaggtattttgtgcgataagaaag 46583298  T
Q  294 ta 295  Q
    ||    
T  46583297 ta 46583296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 50286680 - 50286791
Alignment:
Q  194 gtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaag 293  Q
    ||||||||||||||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||| ||||||||| ||  ||||||||| ||||||||||    
T  50286680 gtacaaaatgacggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatgaagaagagtcacatgtgttttgtgcgataagaaag 50286779  T
Q  294 tactacttaagt 305  Q
    ||| | ||||||    
T  50286780 taccatttaagt 50286791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 1211977 - 1211852
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    |||||| |||||||||||||||| || ||||||||||||||  ||||| ||||| |||||||| | | | ||||| ||||||||||| |||| |||||||    
T  1211977 atcttgtgtccatagtacaaaataacagagaaatagaagcaggtgtaaatcatcgtattcaagttaggtagttgaaatggagaagagcctcaaatgtttt 1211878  T
Q  280 gtgtgataagaaagtactacttaagt 305  Q
    || |||||||||| ||| ||||||||    
T  1211877 gtatgataagaaaataccacttaagt 1211852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 3273115 - 3273232
Alignment:
Q  178 acatcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtt 277  Q
    ||||||| |||||||||||||||| |||  ||||||||||||| || |||  ||||  ||||||| ||||||||||| ||||||| ||| ||||  ||||    
T  3273115 acatcttaggtccatagtacaaaacgacaaagaaatagaagcaaatataaaccatcgaattcaagttggatggttgaaatggagatgagcctcatttgtt 3273214  T
Q  278 ttgtgtgataagaaagta 295  Q
    || ||||||| |||||||    
T  3273215 ttatgtgatacgaaagta 3273232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 287
Target Start/End: Complemental strand, 17666716 - 17666518
Alignment:
Q  96 tatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccctagttacaca---------tcttgg 186  Q
    |||||| |||| || |||||||||||| ||||||  |||| ||| |||||||| |||  ||||||||||||||   |||||||||         ||||||    
T  17666716 tatatgtaatgcaatttcatcaaaaggcgaagtatttctatcttagaggtgaacgttagagatcatatcataca--agttacacagtttaaatatcttgg 17666619  T
Q  187 gtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgat 286  Q
    || || ||||||||||| || ||||||| ||||| |||||| ||||| |||||||| ||||| ||||| |||||||||||  |||  |||||| ||||||    
T  17666618 gttcaaagtacaaaatgtcgaagaaataaaagcaaatgtaaatcatcgtattcaagttggattgttgaaatggagaagagcatcatgtgttttatgtgat 17666519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 43433643 - 43433727
Alignment:
Q  210 aaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagt 294  Q
    ||||||||||| ||||||  |||| |||||||||||| || |||| ||||||||||| ||||| ||||||||| |||||||||||    
T  43433643 aaatagaagcagatgtaaaccatcgtattcaagctgggtgattgaaatggagaagagcctcaggtgttttgtgcgataagaaagt 43433727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 41009922 - 41009812
Alignment:
Q  198 aaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaag---agtctcagatgttttgtgtgataagaaagt 294  Q
    ||||||||||||||||||||||| |||||| || || |||||||| | | ||||||| |||||||||   | ||| || || ||||| |||||||||| |    
T  41009922 aaaatgacggagaaatagaagcaaatgtaaatcttcgtattcaagttaggtggttgaaatggagaagattaatctgaggtgatttgtatgataagaaaat 41009823  T
Q  295 actacttaagt 305  Q
    || ||||||||    
T  41009822 accacttaagt 41009812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 55578729 - 55578837
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    ||||||| || |||||| |||||||| ||||||||||||||||  ||| ||||| |||| ||| | | ||||| | ||||||||||   |||||||||||    
T  55578729 atcttggatctatagtataaaatgactgagaaatagaagcatacataaatcatcgtatttaagttaggtggttaaaatggagaagatcttcagatgtttt 55578828  T
Q  280 gtgtgataa 288  Q
     ||||||||    
T  55578829 atgtgataa 55578837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 35690016 - 35690113
Alignment:
Q  191 atagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataaga 290  Q
    ||||||||||||| |||||||||||||     ||||| ||||| |||||||| ||| ||||||| ||||||||||||  | | |||||| ||||||||||    
T  35690016 atagtacaaaatgccggagaaatagaa-----tgtaaatcatcgtattcaagttgggtggttgaaatggagaagagt-gcgggtgttttatgtgataaga 35690109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 20917685 - 20917762
Alignment:
Q  188 tccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaaga 265  Q
    ||||||||| ||||  |||||||||||||| ||||||||| |||||  |||||| || ||||||| | ||||||||||    
T  20917685 tccatagtataaaacaacggagaaatagaaacatatgtaagtcatcgaattcaatctagatggttaaaatggagaaga 20917762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 17667913 - 17667845
Alignment:
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggt 251  Q
    |||||| ||||||||||||||||  ||||||| | ||| |||||| ||||| |||||||| ||||||||    
T  17667913 ttgggttcatagtacaaaatgacttagaaataaacgcaaatgtaaatcatcgtattcaagttggatggt 17667845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 41427439 - 41427514
Alignment:
Q  95 gtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccc 170  Q
    ||||||| ||||||| |||| |||||   ||||||| ||||||||  | |||||| ||||||||||||||||||||    
T  41427439 gtatatgaaatgtaatttcagcaaaaaacgaagtagttctaccttaaaagtgaaaattgaagatcatatcataccc 41427514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 55769022 - 55768985
Alignment:
Q  132 tctaccttggaggtgaaagttgaagatcatatcatacc 169  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  55769022 tctaccttagaggtgaaagttgaagatcatgtcatacc 55768985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 55833278 - 55833241
Alignment:
Q  132 tctaccttggaggtgaaagttgaagatcatatcatacc 169  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  55833278 tctaccttagaggtgaaagttgaagatcatgtcatacc 55833241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 1629136 - 1629208
Alignment:
Q  190 catagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggaga 262  Q
    ||||||| |||| || ||||||||||||||| |||||| ||||| |||||||  ||  ||||||| |||||||    
T  1629136 catagtataaaacgatggagaaatagaagcagatgtaaatcatcgtattcaacttgagtggttgaaatggaga 1629208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 17668006 - 17667935
Alignment:
Q  96 tatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatac 168  Q
    |||||| ||||||| |||| |||| || ||||||| | |||||| ||||||||||||| | ||||||||||||    
T  17668006 tatatgtaatgtaatttcaacaaa-ggcgaagtagttataccttagaggtgaaagttggatatcatatcatac 17667935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 39755007 - 39754979
Alignment:
Q  141 gaggtgaaagttgaagatcatatcatacc 169  Q
    |||||||||||||||||||||||||||||    
T  39755007 gaggtgaaagttgaagatcatatcatacc 39754979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 93 - 305
Target Start/End: Original strand, 25190977 - 25191199
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttacac---------atc 182  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| ||||||||         |||    
T  25190977 gagtatatggaatgtaacttcagcaaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcatagcccaagttacacggtttaaatatc 25191076  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  25191077 ttgggtctatagtacaaaatgatggagaaatagaagcaaatgtaaatcatcgtattcaagctgggtggttgaaatggagaagagtctcaggtgttttgtg 25191176  T
Q  283 tgataagaaagtactacttaagt 305  Q
     ||||||||||||| ||||||||    
T  25191177 cgataagaaagtaccacttaagt 25191199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 38849621 - 38849914
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    |||| |||||||||||||  ||||||||| ||||| || ||||||||||| || |||||| || |||||| ||      ||||||||||||||||| |||    
T  38849621 tgaataggaggctagagatctggaggcaagccctataatcgtatggtttccgcttgagtaaaagtaagacgga------gtatatggaatgtaactacat 38849714  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacc-ctagttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||         |||||||||||| |||||||||||||    
T  38849715 caaaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcatacctcaatttacacggtttaaatatcttgggtccacagtacaaaatgac 38849814  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||  |||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||||| ||||||| ||||||||    
T  38849815 ggagaaatagaagcagatgtaagccattgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataacaaagtaccacttaagt 38849914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 47542466 - 47542173
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      || |||||||||||||||||     
T  47542466 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtgtatggaatgtaacttcag 47542373  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    || ||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||         ||||||||||| | ||||||||||||    
T  47542372 cagaaggagaagtaggtctaccttggaggtgaaagttggagatcatttcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgac 47542273  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  ||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||||||    
T  47542272 ggagaaatagaagcagatgtaagccatcatattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagt 47542173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 93 - 305
Target Start/End: Complemental strand, 51448393 - 51448171
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atc 182  Q
    ||||||||| |||||||||||| |  ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||         |||    
T  51448393 gagtatatgaaatgtaacttcagcggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatc 51448294  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||   ||| |||||||||||| ||||||| ||||||||||| ||| | |||||||||    
T  51448293 ttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagctatcgtattcaagctgggtggttgaaatggagaagagcctcgggtgttttgtg 51448194  T
Q  283 tgataagaaagtactacttaagt 305  Q
     ||||||||||||| ||||||||    
T  51448193 cgataagaaagtaccacttaagt 51448171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 96 - 305
Target Start/End: Original strand, 27917173 - 27917392
Alignment:
Q  96 tatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttacac---------atcttg 185  Q
    |||||||| ||||||||||  |||||||||| ||| ||||||||| |||||||||||| ||||||||||||| ||| ||||||||         ||||||    
T  27917173 tatatggattgtaacttcagtaaaaggagaactagttctaccttgaaggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatcttg 27917272  T
Q  186 ggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtga 285  Q
     |||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||| ||| | | ||| || |||||||| ||||  |||||| |||||    
T  27917273 agtccatagtacaaaatgacggagaaatataagcatatataaatcatcgtattcaagttgggtagctgaaatagagaagagcctcatgtgttttatgtga 27917372  T
Q  286 taagaaagtactacttaagt 305  Q
    ||| ||||||| ||||||||    
T  27917373 taaaaaagtaccacttaagt 27917392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 297
Target Start/End: Original strand, 48221383 - 48221596
Alignment:
Q  94 agtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacc-ctagttacacat---------ct 183  Q
    |||||||| ||||||| |||| ||||||| | ||||| |||| ||| ||||||||||||||||||||||||||||| | ||||||||||         ||    
T  48221383 agtatatgtaatgtaatttcagcaaaaggtgtagtagttctatcttagaggtgaaagttgaagatcatatcataccacaagttacacattttaaatatct 48221482  T
Q  184 tgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgt 283  Q
    ||| | |||||||||||||||| ||||| ||||||||||||||| |||||  |||||| |||||||||||| ||| ||||||  |||  |||||||||||    
T  48221483 tggattcatagtacaaaatgacagagaagtagaagcatatgtaaatcatcgaattcaaactggatggttgaaatgaagaagaacctccaatgttttgtgt 48221582  T
Q  284 gataagaaagtact 297  Q
    |||| |||||||||    
T  48221583 gatacgaaagtact 48221596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 28245132 - 28245257
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    ||||||| ||| | ||||||||||| ||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||||||||| ||||||    
T  28245132 atcttggatccttcgtacaaaatgatggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagtctcagttgtttt 28245231  T
Q  280 gtgtgataagaaagtactacttaagt 305  Q
    ||| ||||||||||||| ||||||||    
T  28245232 gtgcgataagaaagtaccacttaagt 28245257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 91 - 295
Target Start/End: Original strand, 29817101 - 29817314
Alignment:
Q  91 cagagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccct-agttacac---------a 180  Q
    |||||||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||| ||||||||||||||| | ||||||||         |    
T  29817101 cagagtatatggaatgtaacttcatcaaaaggtgaagttgttctatcttggaggtgaaagttggagatcatatcataccataagttacacggttcaaata 29817200  T
Q  181 tcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttg 280  Q
    ||||  | |||||||||||||||||||| |||||   ||| |||||| ||||| |||||||| ||| ||||||| || ||||| |||||   |||||||     
T  29817201 tctt-tgaccatagtacaaaatgacggataaataacggcagatgtaaatcatcgtattcaagttgggtggttgaaatagagaatagtctgttatgtttta 29817299  T
Q  281 tgtgataagaaagta 295  Q
    |||||||||||||||    
T  29817300 tgtgataagaaagta 29817314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 52138356 - 52138503
Alignment:
Q  17 gaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatc 116  Q
    |||| ||||||||||||| ||||||||| || || |||||||||| |||||  |||||||||  ||||| ||      |||||||||||||||||||| |    
T  52138356 gaacgggaggctagagacctggaggcaagccttagaagcgtatggattctgtttgagtagaagcaagacgga------gtatatggaatgtaacttcagc 52138449  T
Q  117 aaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccc 170  Q
      ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52138450 ggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccc 52138503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 54425493 - 54425368
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |||| ||||| |  |||||| ||| | ||||||||||  ||||||    
T  54425493 atcttggatccatagtaaaaaatgacggagaaatagaagcatatgtaaatcatcgtatttaagctaggcggttgaaatgaaaaagagtctcatgtgtttt 54425394  T
Q  280 gtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||||| ||||||||    
T  54425393 gtgtgataagaaagtaccacttaagt 54425368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 233
Target Start/End: Original strand, 19757664 - 19757816
Alignment:
Q  91 cagagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttac---------aca 180  Q
    |||||||||||||||||||||| | |||||||  ||||||  ||||||||||||||||||||| ||||||||||||| ||| ||||||         | |    
T  19757664 cagagtatatggaatgtaactttagcaaaaggcaaagtagtcctaccttggaggtgaaagttggagatcatatcataccccaagttacatggtttaaata 19757763  T
Q  181 tcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatc 233  Q
    |||||||||||||||||||||| || ||||||||  |||| |||||| |||||    
T  19757764 tcttgggtccatagtacaaaataacagagaaataagagcagatgtaaatcatc 19757816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 19736762 - 19736841
Alignment:
Q  91 cagagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccc 170  Q
    |||||||||||||||||||||||| |||||||   |||||  ||||||||||||||||||||| ||||||||||||||||    
T  19736762 cagagtatatggaatgtaacttcagcaaaaggcagagtagtcctaccttggaggtgaaagttggagatcatatcataccc 19736841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 190 - 296
Target Start/End: Original strand, 30345232 - 30345338
Alignment:
Q  190 catagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataag 289  Q
    |||||||||||| ||  |||||||| || ||||| ||| ||||  |||||||| ||| ||||||| ||||||||||||||||| |||||| || ||||||    
T  30345232 catagtacaaaaagaaagagaaataaaaacatatataaatcatagtattcaagttgggtggttgaaatggagaagagtctcaggtgttttatgcgataag 30345331  T
Q  290 aaagtac 296  Q
    |||||||    
T  30345332 aaagtac 30345338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 19757517 - 19757642
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||| ||||||||||||| ||| || || ||||||||||  || |||| |||||||  ||||||||      |||||||||||||||||| | ||||||    
T  19757517 ggaggttagagacttggagacaagccttagaagcgtatggcatccgccttagtagaagcaagacaga------gtatatggaatgtaactttagcaaaag 19757610  T
Q  122 gagaagtaggtctaccttggaggtgaaagttg 153  Q
    |  ||||||  |||||||||||||||||||||    
T  19757611 gcaaagtagtcctaccttggaggtgaaagttg 19757642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 26490012 - 26490095
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaa 263  Q
    ||||||| |||||  || ||||||||||||||||||||||| |||||| |||||||||| ||| ||  ||||||||||| ||||    
T  26490012 atcttggttccatgatataaaatgacggagaaatagaagcagatgtaaatcatcatattgaagttgagtggttgagatgaagaa 26490095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 52138553 - 52138620
Alignment:
Q  238 tcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||| ||||||| ||||||||||||||||| ||| ||||| ||||||||| ||| ||||||||    
T  52138553 tcaagctgggtggttgaaatggagaagagtctcaggtgtcttgtgcgataagaaaataccacttaagt 52138620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 9258443 - 9258522
Alignment:
Q  49 taaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaaggagaagtaggtct 134  Q
    ||||||||| ||||||| ||||||||||||  ||||| ||      |||||||||||||||||||| |||||||||||||||||||    
T  9258443 taaaagcgtgtggtttccgcctgagtagaagcaagacgga------gtatatggaatgtaacttcaacaaaaggagaagtaggtct 9258522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 43111699 - 43111626
Alignment:
Q  94 agtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata 167  Q
    |||||||| ||||||| |||| |||||| |||||||| | |||||| ||||||| ||||| |||||||||||||    
T  43111699 agtatatgtaatgtaatttcagcaaaagaagaagtagttgtaccttagaggtgacagttggagatcatatcata 43111626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 5168599 - 5168647
Alignment:
Q  256 atggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    ||||||||||| ||||| ||||||||| ||||||||||||| |||||||    
T  5168599 atggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaag 5168647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 40674632 - 40674575
Alignment:
Q  248 tggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    |||||||  ||| ||||||||| ||||||||| |||||||||||||||  ||||||||    
T  40674632 tggttgaagtggggaagagtctgagatgttttatgtgataagaaagtatcacttaagt 40674575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 53519357 - 53519405
Alignment:
Q  256 atggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    ||||||||||| ||||| ||||||||| ||||||||||||  |||||||    
T  53519357 atggagaagagcctcaggtgttttgtgcgataagaaagtatcacttaag 53519405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 45368374 - 45368087
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| ||||||||| || || |||||||||||||  ||||||||||||  ||||| |       |||||||||||||||||||| ||||||    
T  45368374 ggaggctagagacctggaggcaagccttagaagcgtatggttttcgcctgagtagaagcaagacggg------gtatatggaatgtaacttcaacaaaag 45368281  T
Q  122 gagaagta--ggtctaccttggaggtgaaagttgaagatcatatcataccctagttacac---------atcttgggtccatagtacaaaatgacggaga 210  Q
    |||||||   |||||||||||||||||||||||| |||||||||||||||| | ||||||         |||||||||||||| |||||||||| |||||    
T  45368280 gagaagtgtgggtctaccttggaggtgaaagttggagatcatatcatacccaaattacacggtttaaatatcttgggtccataatacaaaatgatggaga 45368181  T
Q  211 aatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    |||||||||| |||||| | ||| |||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  45368180 aatagaagcagatgtaaattatcgtattcaagctgggtggttgaaatggagaagagtctcaggtgttttgtgcgataagaaagtaccacttaag 45368087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 2610055 - 2610348
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| |||||||||| || ||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      ||||||| ||||||||||||     
T  2610055 tgaacgggaggctagaaacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtatatgaaatgtaacttcag 2610148  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  2610149 cagaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgac 2610248  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
     |||||||||||||| ||||||  ||||||||||||||||| ||||||| ||||||||||| ||||| |||||| || ||||||||||||| ||||||||    
T  2610249 agagaaatagaagcagatgtaaaccatcatattcaagctgggtggttgaaatggagaagagcctcaggtgttttatgcgataagaaagtaccacttaagt 2610348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 305
Target Start/End: Original strand, 4807130 - 4807412
Alignment:
Q  27 ctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaaggagaa 126  Q
    |||||||||||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||    ||||||||    
T  4807130 ctagagacttggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcagtggaaggagaa 4807223  T
Q  127 gtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacaca---------tcttgggtccatagtacaaaatgacggagaaataga 216  Q
    ||||||||||||||||||||||||||| |||||||||||||||| | ||||||||         |||||||||  | |||||||||||||||||||||||    
T  4807224 gtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacagtttaaatatcttgggtctttcgtacaaaatgacggagaaataga 4807323  T
Q  217 agcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    |||| ||||||  |||| |||||||| ||| ||||||| ||||||||||||||||| ||||||||| ||||||||||||| | ||||||    
T  4807324 agcagatgtaagccatcgtattcaagatgggtggttgaaatggagaagagtctcaggtgttttgtgcgataagaaagtaccatttaagt 4807412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 94 - 304
Target Start/End: Complemental strand, 11992789 - 11992569
Alignment:
Q  94 agtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atct 183  Q
    |||||||||||||||||||||  |||| ||||||| |||||||||| ||||||||||||| |||||||||||||||| | |||||||         ||||    
T  11992789 agtatatggaatgtaacttcagtaaaaagagaagtgggtctaccttagaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatct 11992690  T
Q  184 tgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgt 283  Q
    |||||| |||||||||||||| ||||||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||||| ||||| |||||||||     
T  11992689 tgggtctatagtacaaaatgatggagaaatagaagcagatgtaaatcatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgc 11992590  T
Q  284 gataagaaagtactacttaag 304  Q
    ||||||||||||| |||||||    
T  11992589 gataagaaagtaccacttaag 11992569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 38453373 - 38453082
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| |||||||||||||| ||||||||||| || |||||||||| ||| || | |||||||  ||||| ||      |||||||||||||||| |||     
T  38453373 tgaacgggaggctagagact-ggaggcaaaccatagaagcgtatggattccgcttaagtagaagcaagacgga------gtatatggaatgtaacatcag 38453281  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  |||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||||||| |  |||||||||||    
T  38453280 cggaaggagaagtag-tctaccttggaggtgaaagttggagatcatatcataccccaagttacacgatttaaatatcttgggtccttcatacaaaatgac 38453182  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||| ||||||||||| ||||  ||||||||| ||||||||||||| ||||||||    
T  38453181 ggagaaatagaagcatatgtaagccatcatattcaagctgggtggttgaaatggagaagagcctcatgtgttttgtgcgataagaaagtaccacttaagt 38453082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 41763798 - 41763504
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| ||||||||| || ||  ||||||||||||| ||||||||||||  ||||| ||      |||||||||||||||||||| ||||||    
T  41763798 ggaggctagagacctggaggcaagccttagtagcgtatggtttccgcctgagtagaagcaagacgga------gtatatggaatgtaacttcagcaaaag 41763705  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttacac---------atcttgggtccatagtacaaaatgacggagaa 211  Q
    ||||||| |||||||||||||||||||||||| |||| |||||||| ||| |||| |||         |||||||||||||||||||||||| |||||||    
T  41763704 gagaagtgggtctaccttggaggtgaaagttggagattatatcataccccaagttgcacgatttaaatatcttgggtccatagtacaaaatgtcggagaa 41763605  T
Q  212 atagaagcatatgtaactcatcatattcaagctggatgg--------ttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaa 303  Q
    ||||||||| |||||| ||||| |||||||||||| |||        |||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||||    
T  41763604 atagaagcagatgtaaatcatcgtattcaagctgggtggttgaaaacttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaa 41763505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 93 - 305
Target Start/End: Original strand, 3865670 - 3865892
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttacac---------atc 182  Q
    ||||||||| |||||||||||| |  ||||||||||| ||||||||||||||||||||||| |||||||||  || ||| ||||||||         | |    
T  3865670 gagtatatgaaatgtaacttcagcggaaggagaagtacgtctaccttggaggtgaaagttggagatcatattgtatcccaagttacacggtttcaataac 3865769  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||   ||| |||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  3865770 ttgggtccttcgtacaaaatgacggagaaatagaagcaaatgtaagctatcgtattcaagctgggtggttgaaatggagaagagcctcagatgttttgtg 3865869  T
Q  283 tgataagaaagtactacttaagt 305  Q
    |||||||||||||||||||||||    
T  3865870 tgataagaaagtactacttaagt 3865892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 305
Target Start/End: Original strand, 30743160 - 30743443
Alignment:
Q  26 gctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaaggaga 125  Q
    ||||||||||||||| |||||| || |||| ||||||||| ||||| ||||||  ||||||||      |||||||||||||||||||| ||||||||||    
T  30743160 gctagagacttggagacaaaccttagaagcatatggtttccgcctgggtagaagaaagacaga------gtatatggaatgtaacttcagcaaaaggaga 30743253  T
Q  126 agtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttacac---------atcttgggtccatagtacaaaatgacggagaaatag 215  Q
    | | |||||||||||||||||||||||| |||||||| |||| ||| ||||||||         ||||| |||| |||||||||||||||||| ||||||    
T  30743254 aattggtctaccttggaggtgaaagttggagatcataccatatcccaagttacacggtttaaatatcttaggtcaatagtacaaaatgacggataaatag 30743353  T
Q  216 aagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||| | || ||| ||||| |||||||||||  || |||| || |||||||| ||||  ||||||||||||||||||||||| ||||||||    
T  30743354 aagtagatataaatcatcgtattcaagctgagtgattgaaattgagaagagcctcatgtgttttgtgtgataagaaagtaccacttaagt 30743443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 452371 - 452084
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| |||  | |||||||||  ||||| ||      ||||||||||||||||||||     
T  452371 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattccacttgagtagaagcaagacgga------gtatatggaatgtaacttcag 452278  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  |||||||||||||||||||||||||||      || |||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  452277 cggaaggagaagtaggtctaccttggaggt------tggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgac 452184  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||||||    
T  452183 ggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagt 452084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 91 - 305
Target Start/End: Original strand, 8180376 - 8180600
Alignment:
Q  91 cagagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatac-cctagttacac---------a 180  Q
    ||||||||||||||||||| ||||    ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||         |    
T  8180376 cagagtatatggaatgtaatttcagtggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcatactccaagttacacggtttaaata 8180475  T
Q  181 tcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttg 280  Q
    | |||||||| |  || ||||||||||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||| ||||   ||||||    
T  8180476 ttttgggtccttcttataaaatgacggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaagagttttg 8180575  T
Q  281 tgtgataagaaagtactacttaagt 305  Q
    || ||||||||||||| ||||||||    
T  8180576 tgcgataagaaagtaccacttaagt 8180600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 119 - 302
Target Start/End: Complemental strand, 3244304 - 3244116
Alignment:
Q  119 aaggagaagtaggtctaccttggaggtgaaagttgaagatcatatca-----taccctagttacacatcttgggtccatagtacaaaatgacggagaaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||      ||| |   ||| | ||||||||||| | ||||||||||||||||||||    
T  3244304 aaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaat 3244205  T
Q  214 agaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactactta 302  Q
    ||||||| ||||||  |||| |||||||||||| |||| || ||||||| ||| ||||| ||||||||| ||||||||||||| |||||    
T  3244204 agaagcagatgtaagccatcgtattcaagctgggtggtagaaatggagatgagcctcaggtgttttgtgcgataagaaagtaccactta 3244116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 93 - 305
Target Start/End: Complemental strand, 24584290 - 24584068
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacc-ctagttacac---------atc 182  Q
    |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||| ||| | ||||||||         |||    
T  24584290 gagtatatggaatgtaacttcagcaaaaggagaattatgtctaccttggaggtgaaagttggagatcatatcagaccgcaagttacacggtttaaatatc 24584191  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    |||||||||||||||||||||| ||||||||| | ||| || |||  ||||||||||||||||| |||| || |||||||| || |||   |||||||||    
T  24584190 ttgggtccatagtacaaaatgatggagaaatataggcagatttaagccatcatattcaagctgggtggtggaaatggagaatagcctcgtgtgttttgtg 24584091  T
Q  283 tgataagaaagtactacttaagt 305  Q
     || |||||| ||| ||||||||    
T  24584090 cgaaaagaaaataccacttaagt 24584068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 305
Target Start/End: Original strand, 13148914 - 13149133
Alignment:
Q  96 tatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttg 185  Q
    |||||||  |||||||||| ||||||||||| ||| |  ||||||||||||||||||| |||||||||||||||| | |||||||         ||||      
T  13148914 tatatggggtgtaacttcagcaaaaggagaaatagtttaaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatctca 13149013  T
Q  186 ggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtga 285  Q
    ||||||||||||||||||||||||||||||||| | ||  || ||||| |||||||| ||||||||||| ||| |||||||  |||| |||||  | |||    
T  13149014 ggtccatagtacaaaatgacggagaaatagaagtagatacaaatcatcgtattcaagttggatggttgaaatgaagaagagcttcaggtgtttcatatga 13149113  T
Q  286 taagaaagtactacttaagt 305  Q
    ||||||||||| ||| ||||    
T  13149114 taagaaagtaccactcaagt 13149133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 186 - 305
Target Start/End: Complemental strand, 6238334 - 6238216
Alignment:
Q  186 ggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtga 285  Q
    |||||||||||||||||| |||||||||| || ||||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||  ||||||||||||    
T  6238334 ggtccatagtacaaaatgtcggagaaataaaaacatatgtaaatcatcgtattcaagttggatggttgaaatggagaagagcctcatgtgttttgtgtga 6238235  T
Q  286 taagaaagtactacttaagt 305  Q
    ||| ||| ||| ||||||||    
T  6238234 taa-aaaataccacttaagt 6238216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 12475176 - 12475031
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| |||  | |||||| ||  ||||| ||      ||||||||||||||||||||     
T  12475176 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattcctcttgagtataagcaagacgga------gtatatggaatgtaacttcag 12475083  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata 167  Q
    |  ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  12475082 cggaaggagaagtaggtctaccttagaggtgaaagttggagatcatatcata 12475031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 17581164 - 17581270
Alignment:
Q  181 tcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttg 280  Q
    |||||||| ||| ||||||||||||  ||||||| ||||| |||||| || ||||||||||| ||||||||| | ||||||||||||||||| ||||||     
T  17581164 tcttgggttcattgtacaaaatgacaaagaaataaaagcagatgtaaatcctcatattcaagttggatggttcaaatggagaagagtctcaggtgtttta 17581263  T
Q  281 tgtgata 287  Q
    |||||||    
T  17581264 tgtgata 17581270  T

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Target: chr2; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 41197792 - 41197691
Alignment:
Q  206 ggagaaatagaagcatatgtaactcatcat---attcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactactta 302  Q
    |||||||||||||||||||| | |||||||   ||||||| ||| ||||||| ||||||||||||||||| ||||||||| ||||| ||||||| |||||    
T  41197792 ggagaaatagaagcatatgtgaatcatcatcgtattcaagttgggtggttgaaatggagaagagtctcaggtgttttgtgcgataaaaaagtaccactta 41197693  T
Q  303 ag 304  Q
    ||    
T  41197692 ag 41197691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 258
Target Start/End: Original strand, 37281706 - 37281882
Alignment:
Q  94 agtatatggaatgta--acttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacacat--------- 181  Q
    |||||||| ||||||  |||||| ||||||   |||||| |||||||||||||||||||||  ||||||| |||||||| | |||||||||             
T  37281706 agtatatgaaatgtagtacttcaacaaaagacaaagtagttctaccttggaggtgaaagtttgagatcatgtcataccccaagttacacattttaaatat 37281805  T
Q  182 cttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatg 258  Q
    ||| | ||||||||| ||||||| ||||||||||||| | |||||| ||||| |||||||| ||| |||||||||||    
T  37281806 cttagctccatagtataaaatgaaggagaaatagaagtagatgtaaatcatcctattcaagttgggtggttgagatg 37281882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 36038817 - 36038895
Alignment:
Q  92 agagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccc 170  Q
    ||||| |||||||||| | |||| ||||||| ||||||| ||||||||  |  ||||||||||||||||||||||||||    
T  36038817 agagtgtatggaatgtgatttcagcaaaaggcgaagtagttctaccttataactgaaagttgaagatcatatcataccc 36038895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 6465431 - 6465515
Alignment:
Q  195 tacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    ||||||||||| ||||||| |||||||||| || |||||| |||||||   | ||| |||||||||||||||||| || ||||||    
T  6465431 tacaaaatgactgagaaattgaagcatatgcaaatcatcaaattcaagtcaggtggctgagatggagaagagtcttagctgtttt 6465515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 13593022 - 13592958
Alignment:
Q  103 aatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata 167  Q
    |||||||||||| ||||||  ||||||| || | ||| |||||||||||||||||||||||||||    
T  13593022 aatgtaacttcaacaaaagacgaagtagttcaaacttagaggtgaaagttgaagatcatatcata 13592958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 33594845 - 33594757
Alignment:
Q  191 atagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    ||||||||||| | |||||||||||||| | ||||||  ||||| |||||| |||| |||||||||||||| || |||| || ||||||    
T  33594845 atagtacaaaacgtcggagaaatagaaggagatgtaaaacatcaaattcaaactgggtggttgagatggaggagtgtcttaggtgtttt 33594757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 36565996 - 36565703
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  |||| |||      ||||||| ||||||||||||     
T  36565996 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagataga------gtatatgaaatgtaacttcaa 36565903  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  36565902 cggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtcctttgtacaaaatgac 36565803  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||||||    
T  36565802 ggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagt 36565703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 93 - 305
Target Start/End: Complemental strand, 4033178 - 4032956
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atc 182  Q
    |||||||||||||||||||||| ||||||||| || ||||||||||||||| ||||||||| |||||||||||||||| | |||||||         |||    
T  4033178 gagtatatggaatgtaacttcagcaaaaggagtagaaggtctaccttggagatgaaagttggagatcatatcataccccaagttacacggtttaagtatc 4033079  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    |||||| ||||||||| ||||| ||||||||| |||||||||||| |||||||||||||| ||| ||||||| ||||||||||| ||||| |||||||||    
T  4033078 ttgggttcatagtacacaatgatggagaaataaaagcatatgtaaatcatcatattcaagttgggtggttgaaatggagaagagcctcaggtgttttgtg 4032979  T
Q  283 tgataagaaagtactacttaagt 305  Q
     ||||||||||||| ||||||||    
T  4032978 cgataagaaagtaccacttaagt 4032956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 42854762 - 42854467
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||  ||||| ||      |||||||||||||||||||| ||||||    
T  42854762 ggaggctagagacctggaggcaagccttaaaagcgtatggtttccgcctgagtagaagcaagacgga------gtatatggaatgtaacttcagcaaaag 42854669  T
Q  122 gag---------aagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaat 202  Q
    |||         |||| ||||||||||||||||||||| || |||||||||||||||| | |||||||         ||||||||||||| |||||||||    
T  42854668 gagcaaaaggagaagtgggtctaccttggaggtgaaaggtggagatcatatcataccccaagttacacggtttaaatatcttgggtccatcgtacaaaat 42854569  T
Q  203 gacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactactta 302  Q
    |   |||||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||||| ||||  ||||||||| ||||||||||||| |||||    
T  42854568 gtttgagaaatagaagcagatgtaaatcatcgtattcaagctgggtggttgaaatggagaagagcctcatgtgttttgtgcgataagaaagtaccactta 42854469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 12492597 - 12492305
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| |||||| || || || |||||||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  12492597 tgaactggaggctagagacctggaggtaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcag 12492504  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||| ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  12492503 cggaaggataagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgac 12492404  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    ||||||||||||||| ||||||   ||| |||||| | ||| ||||||| ||||||||||| ||||  ||||||||| ||||||||||||| |||||||    
T  12492403 ggagaaatagaagcagatgtaagctatcgtattcaggttgggtggttgaaatggagaagagcctcatgtgttttgtgcgataagaaagtaccacttaag 12492305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 91 - 305
Target Start/End: Original strand, 36544748 - 36544972
Alignment:
Q  91 cagagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------a 180  Q
    |||||||||||||||||||||| | |  ||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||          |    
T  36544748 cagagtatatggaatgtaactttagcggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacaaggtttaaata 36544847  T
Q  181 tcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttg 280  Q
    || |||| |  | ||||||||||||||||||||||||||| |||||| ||||| |||||||| ||| ||||||| ||||| ||||| ||||| |||||||    
T  36544848 tcatggggctttcgtacaaaatgacggagaaatagaagcagatgtaagtcatcgtattcaagttgggtggttgaaatggataagagcctcaggtgttttg 36544947  T
Q  281 tgtgataagaaagtactacttaagt 305  Q
    || ||||||||||||| ||||||||    
T  36544948 tgcgataagaaagtaccacttaagt 36544972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 15216019 - 15215734
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| |||||||||| | || |||| ||||||||| ||||||||||||  ||||| ||      ||| ||| |||||||||||| ||||||    
T  15216019 ggaggctagagacctggaggcaaaacttagaagcatatggtttccgcctgagtagaagcaagacgga------gtacatgaaatgtaacttcagcaaaag 15215926  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccc-tagttacac---------atcttgggtccatagtacaaaatgacggagaa 211  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||||||||  ||||||||         || |||||||||||||||||| ||||  ||||    
T  15215925 gagaagtgggtctaccatggaggtgaaagttggagatcatatcatacccaaagttacacggtttaaatatattgggtccatagtacaaagtgac--agaa 15215828  T
Q  212 atag-aagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    |||| ||||| |||||| ||||| |||||||||| | ||||||| ||||||||||| |||   ||| ||||| | ||||||||||  |||||||    
T  15215827 atagaaagcagatgtaaatcatcgtattcaagctaggtggttgaaatggagaagagcctccagtgtcttgtgcggtaagaaagtatcacttaag 15215734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 25439249 - 25439356
Alignment:
Q  198 aaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtact 297  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||     
T  25439249 aaaatgacggagaaatagaagcatatgtaaatcatcgtatgcaagcaggatggttgaaatggagaagagtctcgggtgttttgtgtgataagaaagtacc 25439348  T
Q  298 acttaagt 305  Q
    ||||||||    
T  25439349 acttaagt 25439356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 93 - 305
Target Start/End: Complemental strand, 8880118 - 8879896
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttacac---------atc 182  Q
    ||||| ||| |||||||||||| |||||||||||||||||| ||| || |||||||||||||| ||||||||||| ||| ||||||||         |||    
T  8880118 gagtacatgaaatgtaacttcagcaaaaggagaagtaggtcgaccgtgaaggtgaaagttgaaaatcatatcatatcccaagttacacggtttaaatatc 8880019  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    |||||  ||||||||||||||| |||||||||||| || ||| |   |||| |||||| | ||||||||||| || |||||||  || || |||||||||    
T  8880018 ttgggctcatagtacaaaatgaaggagaaatagaaccagatgaatagcatcgtattcatgttggatggttgaaatagagaagaaccttaggtgttttgtg 8879919  T
Q  283 tgataagaaagtactacttaagt 305  Q
     ||||||||||||| ||||||||    
T  8879918 cgataagaaagtaccacttaagt 8879896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 18124878 - 18124993
Alignment:
Q  187 gtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgat 286  Q
    ||||||| |||||||||| ||||||||||||||| ||||||||||||  |||||||||| |||||||| |||||||| |  ||||| |||||| ||||||    
T  18124878 gtccataatacaaaatgatggagaaatagaagcagatgtaactcatcgaattcaagctgaatggttgaaatggagaaaaacctcaggtgttttatgtgat 18124977  T
Q  287 aagaaagtactactta 302  Q
    |||||||||| |||||    
T  18124978 aagaaagtaccactta 18124993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 267
Target Start/End: Original strand, 29735447 - 29735592
Alignment:
Q  125 aagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacacatcttgg--gtccatagtacaaaatgacggagaaatagaagcat 221  Q
    |||||| |||||| ||||||||||||| | |||||||||||||||| | |||| ||   ||    ||||||||| |||||||||||||||||||||||||    
T  29735447 aagtagttctaccatggaggtgaaagtgggagatcatatcataccccaagttatacgatttaaacgtccatagttcaaaatgacggagaaatagaagcat 29735546  T
Q  222 atgtaactcatcatattcaagctggatggttgagatggagaagagt 267  Q
    |||||| ||||| |||||||| ||| ||||||| ||||||| ||||    
T  29735547 atgtaaatcatcttattcaagttgggtggttgaaatggagatgagt 29735592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 37077490 - 37077585
Alignment:
Q  210 aaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||  |||||| ||||| ||||||||||   ||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||||||    
T  37077490 aaatagaagccgatgtaaatcatcgtattcaagctaagtggttgaaatggagaagagtctcaggtgttttgtgtgataagtaagtaccacttaagt 37077585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 303
Target Start/End: Original strand, 13589138 - 13589258
Alignment:
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    |||||||  ||||| ||||||| | ||||||||||||||||| || ||| |||||||||| ||||||||||| ||||||||||| || |  |||||| ||    
T  13589138 ttgggtcgttagtataaaatgatgaagaaatagaagcatatgaaaatcaccatattcaaggtggatggttgaaatggagaagagcctgatgtgttttatg 13589237  T
Q  283 tgataagaaagtactacttaa 303  Q
      |||||||||||||| ||||    
T  13589238 ctataagaaagtactatttaa 13589258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 13984730 - 13984841
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    ||||||||||||||||| ||||||||  ||||||| ||||| |||||| ||||| |||| ||| ||||||||||| ||| ||||||| ||||  ||||||    
T  13984730 atcttgggtccatagta-aaaatgacaaagaaataaaagcagatgtaaatcatcgtatttaagttggatggttgaaatgaagaagagcctcaagtgtttt 13984828  T
Q  280 gtgtgataagaaa 292  Q
     ||||||||||||    
T  13984829 atgtgataagaaa 13984841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 25299950 - 25300057
Alignment:
Q  198 aaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtact 297  Q
    ||||||| || ||||||||||||||||||| ||||| ||| ||||| ||  | |||| ||||||||||| ||||| ||||||||| |||||||||||||     
T  25299950 aaaatgatggggaaatagaagcatatgtaaatcatcgtatgcaagcagggggtttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtacc 25300049  T
Q  298 acttaagt 305  Q
    | ||||||    
T  25300050 aattaagt 25300057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 287
Target Start/End: Complemental strand, 28300788 - 28300588
Alignment:
Q  94 agtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccctagttacaca---------tctt 184  Q
    |||||||  ||||| | |||||||||||  ||||||| || ||||| |||||||||| || ||||||||||||||   |||||||||         ||||    
T  28300788 agtatatttaatgtgatttcatcaaaagacgaagtagttcgaccttagaggtgaaagctggagatcatatcataca--agttacacagtttaaatatctt 28300691  T
Q  185 gggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtg 284  Q
    |||| ||| |||||||||||| |||| ||| ||||| |||||  ||||| |||||||| ||||||||| |  |||||||||| ||| |||||||| ||||    
T  28300690 gggttcatggtacaaaatgactgagatataaaagcagatgtacatcatcgtattcaagttggatggttaaattggagaagagactcggatgttttatgtg 28300591  T
Q  285 ata 287  Q
    |||    
T  28300590 ata 28300588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 25288613 - 25288722
Alignment:
Q  198 aaaatgacggagaaatagaagcatatgtaactcatcatattcaagctgga--tggttgagatggagaagagtctcagatgttttgtgtgataagaaagta 295  Q
    |||||||||| ||||||||||||||||||| ||||| ||| ||||| ||   || |||| ||||||||||| ||||| ||||||||| ||||||||||||    
T  25288613 aaaatgacggggaaatagaagcatatgtaaatcatcgtatgcaagcagggggtgtttgaaatggagaagagcctcaggtgttttgtgcgataagaaagta 25288712  T
Q  296 ctacttaagt 305  Q
    | | ||||||    
T  25288713 ccaattaagt 25288722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 284
Target Start/End: Complemental strand, 33830817 - 33830716
Alignment:
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||| ||||| | |||||| ||||||||| | |||  |||||||||||  |||||| ||    
T  33830817 ttgggtccattgtacaaaatgacgaagaaataaaagcatatgtaaatcatcgtgttcaagttggatggttaaaatgttgaagagtctcaagtgttttatg 33830718  T
Q  283 tg 284  Q
    ||    
T  33830717 tg 33830716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 39946602 - 39946675
Alignment:
Q  230 catcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaa 303  Q
    |||| |||||||||||||||||||| ||||||||||| || || ||||||||| ||||||||||||| ||||||    
T  39946602 catcgtattcaagctggatggttgaaatggagaagagccttaggtgttttgtgcgataagaaagtaccacttaa 39946675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 30113766 - 30113671
Alignment:
Q  198 aaaatgacggagaaata-gaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaa 292  Q
    ||||||||||||||| | |||||| |||||| ||||  ||||||||||  |||||||| ||||||||||||| ||| |||||| ||||||||||||    
T  30113766 aaaatgacggagaaaaaagaagcagatgtaaatcattgtattcaagctaaatggttgaaatggagaagagtcgcaggtgttttatgtgataagaaa 30113671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 18849798 - 18849722
Alignment:
Q  94 agtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccc 170  Q
    |||||||||||| |||| ||| ||||||| ||||||| | | |||| ||||| ||| ||| ||||||||||||||||    
T  18849798 agtatatggaatataacgtcaacaaaaggtgaagtagttatgccttagaggtaaaaattggagatcatatcataccc 18849722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 30578803 - 30578704
Alignment:
Q  191 atagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataaga 290  Q
    ||||||||||| ||| |||||| | ||| |||||||| ||||   |||||| |   |||||||| ||| |||||||||||| ||||||| ||||||||||    
T  30578803 atagtacaaaacgacagagaaacataagtatatgtaaatcatagaattcaaacaaaatggttgaaatgaagaagagtctcatatgttttatgtgataaga 30578704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 41444987 - 41444912
Alignment:
Q  94 agtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacc 169  Q
    |||||||||||||||| || | ||||||| |||| |  |||| ||| |||||||||| || |||||||||||||||    
T  41444987 agtatatggaatgtaattttagcaaaaggcgaagcatttctaacttagaggtgaaaggtggagatcatatcatacc 41444912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 6510936 - 6510878
Alignment:
Q  248 tggttgagatggagaagagtctcagatgttttg-tgtgataagaaagtactacttaagt 305  Q
    ||||||| ||||||||||||||||  || |||| ||||||||||||||||| |||||||    
T  6510936 tggttgaaatggagaagagtctcatgtggtttgatgtgataagaaagtactgcttaagt 6510878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 18849697 - 18849624
Alignment:
Q  192 tagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctc 270  Q
    ||||| ||| ||||||||||||||||||| |||||| |||||     |||||||| ||||||| ||||| |||||||||    
T  18849697 tagtataaagtgacggagaaatagaagcaaatgtaaatcatc-----caagctgggtggttgaaatggataagagtctc 18849624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 38667252 - 38667326
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttga 254  Q
    ||||||||| |||||||||||| ||  |||||||| ||| | |||||| ||||| |||| ||| |||||||||||    
T  38667252 atcttgggttcatagtacaaaacgatagagaaataaaagaagatgtaaatcatcgtattaaagttggatggttga 38667326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 10824607 - 10824550
Alignment:
Q  248 tggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||| ||||||||||||||||| |||||| ||||||| |||| ||| | ||||||    
T  10824607 tggttgaaatggagaagagtctcaggtgttttatgtgatacgaaaataccagttaagt 10824550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 45231265 - 45231208
Alignment:
Q  248 tggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||||||||||||  | |||| |||||||| |||||| | |||||||    
T  45231265 tggttgagatggagaagagtctcatgtattttatgtgataaaaaagtattgcttaagt 45231208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 31004751 - 31005043
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  ||||||||      ||||||||||||| ||||||     
T  31004751 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacaga------gtatatggaatgttacttcag 31004844  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac--------atcttgggtccatagtacaaaatgacg 206  Q
    |  ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||        ||||||| ||| | |||||||||||||    
T  31004845 cggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacgtttaaatatcttggctccttcgtacaaaatgacg 31004944  T
Q  207 gagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    |||||||||||||| ||||||  |||| |||||||| ||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||||||    
T  31004945 gagaaatagaagcagatgtaagccatcgtattcaagttgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagt 31005043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 11593480 - 11593780
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| |||||||||  | || |||||||||| ||| || |||||||||  ||||| ||  | ||||||||| ||||||||||||     
T  11593480 tgaacgggaggctagagacctggaggcaagtcttagaagcgtatggattccgcttgagtagaagcaagacggagacggagtatatgaaatgtaacttcag 11593579  T
Q  116 ca-aaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccc-----tag-----ttacacatcttgggtccatagtacaaaatga 204  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||     |||     ||| | ||||||||||| | |||||||||||    
T  11593580 cggaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccccaagttagacggtttaaatatcttgggtccttcgtacaaaatga 11593679  T
Q  205 cggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
     ||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||||| ||||||| |||||||    
T  11593680 tggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataaaaaagtaccacttaag 11593779  T
Q  305 t 305  Q
    |    
T  11593780 t 11593780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 37616443 - 37616736
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  37616443 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcag 37616536  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    || |||||||||||||||||||||||||||||||| || |||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  37616537 cagaaggagaagtaggtctaccttggaggtgaaaggtggagatcatatcataccccaagttacacgatttaaatatcttgggtcctttgtacaaaatgac 37616636  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||  |||||||||||| ||||||| ||||||||||| ||||  ||||||||| ||||||||||||| ||||||||    
T  37616637 ggagaaatagaagcagatgtaagccattgtattcaagctgggtggttgaaatggagaagagcctcaagtgttttgtgcgataagaaagtaccacttaagt 37616736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 46356606 - 46356313
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||| ||||||||| ||||||||| || || |||||||||| | | || |||||||||  ||||| ||      ||||||||||||||||||||     
T  46356606 tgaacgggaagctagagacctggaggcaagccttagaagcgtatggataccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcag 46356513  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  46356512 cggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtcctttgtacaaaatgac 46356413  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||| |||||||| ||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  46356412 ggagaaatagaagcagatgtaagccatcgtattcaagttgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtactacttaagt 46356313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 36651521 - 36651814
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      |||||||||||| |||||||     
T  36651521 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtatatggaatggaacttcag 36651614  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||| ||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |         ||||||||||| | ||||||||||||    
T  36651615 cggaagaagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacgcggtttaaatatcttgggtccttcgtacaaaatgac 36651714  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||||||    
T  36651715 ggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagt 36651814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 38606540 - 38606824
Alignment:
Q  23 gaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaagg 122  Q
    |||||||||||| ||||||||| || || ||| |||||||||| ||||||||||||  ||||| ||      ||||||||||||||| ||   |||||||    
T  38606540 gaggctagagacctggaggcaagccttagaagtgtatggtttccgcctgagtagaagcaagacgga------gtatatggaatgtaatttttgcaaaagg 38606633  T
Q  123 agaagtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttacac---------atcttgggtccatagtacaaaatgacggagaaa 212  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||| ||| ||||||||         ||||||||||||||||||||||||||| |||||    
T  38606634 agaagtgggtctaccttg-aggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatcttgggtccatagtacaaaatgacgaagaaa 38606732  T
Q  213 tagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    |||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||| || || ||||||||| ||||||||||||| |||||||    
T  38606733 tagaagcagatgtaaaccatcgtattcaagctgggtggttgaaatggagaagagccttaggtgttttgtgcgataagaaagtaccacttaag 38606824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 33350561 - 33350268
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  ||||| ||     |||||||||||||||||||||     
T  33350561 tgaacgggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagac-ga-----agtatatggaatgtaacttcag 33350468  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||| ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||         |||| |||||  | ||||||||||||    
T  33350467 cggaagaagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatctagggtctttcgtacaaaatgac 33350368  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||| ||||  ||||||||| ||||||||||||| ||||||||    
T  33350367 ggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaagtgttttgtgcgataagaaagtaccacttaagt 33350268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 39907134 - 39906837
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| |||||||||| | || |||| ||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  39907134 tgaacgggaggctagagacctggaggcaaatcttagaagcatatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcag 39907041  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  ||||||||||||||||||||||||||||||||||| ||||||||||||| |||  |||||||         ||||||||||  | ||||||||||||    
T  39907040 cggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcatatcccatgttacacggtttaaatatcttgggtcattcgtacaaaatgac 39906941  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagc----tggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactactt 301  Q
    ||||||||||||| | ||| ||  |||| |||||||||    ||| ||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  39906940 ggagaaatagaagtagatgcaagccatcgtattcaagctgggtggttggttgaaatggagaagagcctcagatgttttgtgcgataagaaagtaccactt 39906841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 36870044 - 36869751
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||| | ||||||||| |  || |||||||||||||| || |||||||||  |||||| |      ||||||||||||||||||||     
T  36870044 tgaacgggaggctagaggcctggaggcaagctttagaagcgtatggtttccgcttgagtagaagcaagacata------gtatatggaatgtaacttcag 36869951  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccctag----------ttacacatcttgggtccatagtacaaaatgac 205  Q
     ||||||  ||||| ||||||| ||||||||||||||| ||| |||||||||||| |           ||| | ||||||| ||||||||||||||||||    
T  36869950 gaaaagggaaagtatgtctaccctggaggtgaaagttggagagcatatcataccccaaattacgcggtttaaatatcttggatccatagtacaaaatgac 36869851  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    | ||||||| ||||| ||||||  |||| |||||||||||| ||||||| ||||||||||| |||||  |||||||| ||||||||||||| ||||||||    
T  36869850 gaagaaataaaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggggttttgtgcgataagaaagtaccacttaagt 36869751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 93 - 305
Target Start/End: Original strand, 48918986 - 48919208
Alignment:
Q  93 gagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atc 182  Q
    ||||||||||||||| |||||| |||| |||||||||||||||| ||| |||| ||||| | ||||||||| | |||| | |||||||         ||     
T  48918986 gagtatatggaatgtgacttcagcaaatggagaagtaggtctacattgaaggtaaaagtaggagatcatattacaccccaagttacacggtttaaatatt 48919085  T
Q  183 ttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtg 282  Q
    |||| |||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| | ||||| ||||||||||| ||||| |||||||||    
T  48919086 ttggatccatagtacaaaatgacggagaaatagaagcatatgtgaatcatcgtattcaagctgggtagttgaaatggagaagagcctcaggtgttttgtg 48919185  T
Q  283 tgataagaaagtactacttaagt 305  Q
     |||||||||||||  |||||||    
T  48919186 cgataagaaagtaccccttaagt 48919208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 32630140 - 32630282
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| ||||||||| || || |||||||||||||| ||||||||||||  ||||| ||      |||||||||||||||||||| ||||||    
T  32630140 ggaggctagagacctggaggcaagccttagaagcgtatggtttccgcctgagtagaagcaagacgga------gtatatggaatgtaacttcagcaaaag 32630233  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccc 170  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  32630234 gagaagtgggtctaccttggaggtgaaagttggagatcatatcataccc 32630282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 49028800 - 49029035
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| ||||||||| || || |||||||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||    |||    
T  49028800 ggaggctagagacctggaggcaagccttagaagcgtatggattccgcttgagtagaagcaagacgga------gtatatggaatgtaacttcaggggaag 49028893  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttacac---------atcttgggtccatagtacaaaatgacggagaa 211  Q
    |||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||         ||||||||||| | ||||||||||| ||||||    
T  49028894 gagaagtaggtctaccttggaggtgaaagttggagatcagatcataccccaagttacacggtttaaatatcttgggtcctttgtacaaaatgatggagaa 49028993  T
Q  212 atagaagcatatgtaactcatcatattcaagctggatggttg 253  Q
    ||||||||| |||||   |||| |||||||||||| ||||||    
T  49028994 atagaagcagatgtatgccatcgtattcaagctgggtggttg 49029035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 35906788 - 35906663
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||  |||| |||||||||||| ||||||| ||||||||||   |||| ||||||    
T  35906788 atcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagatcttcaggtgtttt 35906689  T
Q  280 gtgtgataagaaagtactacttaagt 305  Q
    ||| ||||||||||||| ||||||||    
T  35906688 gtgcgataagaaagtaccacttaagt 35906663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 24177944 - 24177720
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    |||| |||||||| ||||||||| || || || |||||||||||||| ||||||| |  ||||    ||  |||||||||||||||||||||| ||||||    
T  24177944 ggagactagagacctggaggcaagccttagaaacgtatggtttctgcatgagtagcatcaaga----tg--gagtatatggaatgtaacttcagcaaaag 24177851  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcata-ccctagttacac---------atcttgggtccatagtacaaaatgacggagaa 211  Q
     ||||||||||||| |||| || |||| |||| ||||||||||||| ||| | ||||||         |||  ||||| |||||||||||||||||||||    
T  24177850 aagaagtaggtctagcttgtagatgaaggttggagatcatatcataccccaatttacacggtttaaatatcacgggtcaatagtacaaaatgacggagaa 24177751  T
Q  212 atagaagcatatgtaactcatcatattcaag 242  Q
    ||||||||| |||||| ||||||||||||||    
T  24177750 atagaagcagatgtaaatcatcatattcaag 24177720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 198 - 304
Target Start/End: Original strand, 43281389 - 43281495
Alignment:
Q  198 aaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtact 297  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||||| |||||  |||||||| |||||||||||||     
T  43281389 aaaatgacggagaaatagaagcagatgtaaatcatcgtattcaagctgggtggttgaaatggagaagagcctcaggcgttttgtgcgataagaaagtacc 43281488  T
Q  298 acttaag 304  Q
    |||||||    
T  43281489 acttaag 43281495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 197 - 305
Target Start/End: Original strand, 33072666 - 33072774
Alignment:
Q  197 caaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtac 296  Q
    |||||||||||| || |||||||| ||||||  |||| |||||||| ||||||||||| ||||||||||| ||||  ||||||||| |||||||||||||    
T  33072666 caaaatgacggataattagaagcagatgtaagccatcgtattcaagttggatggttgaaatggagaagagcctcaagtgttttgtgcgataagaaagtac 33072765  T
Q  297 tacttaagt 305  Q
     ||||||||    
T  33072766 cacttaagt 33072774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 34869165 - 34869240
Alignment:
Q  230 catcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||||| |||||||  |||||||||| |||||  |||||||| ||||||||||||| ||||||||    
T  34869165 catcatattcaagctgggtggttgaattggagaagagcctcaggcgttttgtgcgataagaaagtaccacttaagt 34869240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 7272784 - 7272859
Alignment:
Q  229 tcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||| |||||||||||| |||||||||| ||||| || ||||| | ||||||||||||||||||||| ||||||||    
T  7272784 tcatcgtattcaagctgggtggttgagattgagaa-agcctcaggtattttgtgtgataagaaagtaccacttaagt 7272859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 21517911 - 21517814
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttt 278  Q
    ||||||| | ||||||||||| ||||| |||||||  | ||||||||| |||||||||||||| ||| ||||||| || |||||||| || ||||||||    
T  21517911 atcttggattcatagtacaaa-tgacgaagaaataataacatatgtaaatcatcatattcaagttgggtggttgaaatcgagaagagccttagatgttt 21517814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 23087688 - 23087582
Alignment:
Q  181 tcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttg 280  Q
    |||||||| ||||||||||||||| ||||||||| |||  ||||||| ||||  |||||||| | ||||||||| ||||| ||||| |||   ||||||     
T  23087688 tcttgggttcatagtacaaaatgaaggagaaataaaagtgtatgtaaatcattgtattcaagttagatggttgaaatggaaaagagcctcgtctgtttta 23087589  T
Q  281 tgtgata 287  Q
    |||||||    
T  23087588 tgtgata 23087582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 7189751 - 7189696
Alignment:
Q  248 tggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaa 303  Q
    ||||||| |||||||| |||||||| |||||| | ||||||||||||| |||||||    
T  7189751 tggttgaaatggagaaaagtctcaggtgttttatttgataagaaagtattacttaa 7189696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 32630339 - 32630414
Alignment:
Q  229 tcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaag 304  Q
    ||||| |||||||||||| | ||||| ||||||||||| |||   ||||||||| ||||||||||||  |||||||    
T  32630339 tcatcgtattcaagctgggtagttgaaatggagaagagcctcgagtgttttgtgcgataagaaagtatcacttaag 32630414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 305
Target Start/End: Complemental strand, 12347 - 12060
Alignment:
Q  22 ggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcatcaaaag 121  Q
    ||||||||||||| | ||||||| || || |||||||||||||| || ||||||||| |||||| |||      ||||| ||||||||||||| ||||||    
T  12347 ggaggctagagacctagaggcaagccttagaagcgtatggtttccgcttgagtagaagtaagacggat------tatatagaatgtaacttcagcaaaag 12254  T
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgacggagaa 211  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||| | ||||||          ||||||||||||||||||||||||||||||||    
T  12253 gagaagtaggtctaccttcgcggtgaaagttggagatcatatcataccccaagttacatggtttaaatatcttgggtccatagtacaaaatgacggagaa 12154  T
Q  212 atagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||||||||||  |||| |||| ||||||| | ||||| ||||||||||  ||||  ||||||||| |||||||||||||  |||||||    
T  12153 atagaagcatatgtaagccatcgtatttaagctgggtcgttgaaatggagaagaacctcaagtgttttgtgcgataagaaagtacctcttaagt 12060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 30995 - 31288
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttctgcctgagtagaactaagacagatgcagagtatatggaatgtaacttcat 115  Q
    ||||| ||||||||||||| ||||||||| || || ||| |||||| ||| || |||||||||  ||||| ||      ||||||||||||||||||||     
T  30995 tgaacgggaggctagagacctggaggcaagccttagaagtgtatggattccgcttgagtagaagcaagactga------gtatatggaatgtaacttcag 31088  T
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttgggtccatagtacaaaatgac 205  Q
    |  |||||||||||||||||||||||| |||||||||| |||||||||||||||| | |||||||         ||||||||||| | ||||||||||||    
T  31089 cggaaggagaagtaggtctaccttggaagtgaaagttggagatcatatcataccccaagttacacggtttaaacatcttgggtccttcgtacaaaatgac 31188  T
Q  206 ggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||| ||| | |||||   |||| |||||||||||| ||||||| ||||||||||| ||||  ||||||||| ||||||||||||| ||||||||    
T  31189 ggagaaataaaagtagatgtaggccatcgtattcaagctgggtggttgaaatggagaagagcctcaagtgttttgtgcgataagaaagtaccacttaagt 31288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 96 - 305
Target Start/End: Complemental strand, 2951 - 2732
Alignment:
Q  96 tatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacccta-gttacac---------atcttg 185  Q
    ||||||||||||||||||| |  ||||||||||  |||||| |||||||||||||||| |||||||||||||||| | |||||||         ||||||    
T  2951 tatatggaatgtaacttcagcggaaggagaagtcagtctacattggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttg 2852  T
Q  186 ggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtga 285  Q
    ||||| | ||||||||||||| ||||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||||| ||||| ||||||||| ||    
T  2851 ggtccttcgtacaaaatgacgaagaaatagaagcagatgtaagtcatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcga 2752  T
Q  286 taagaaagtactacttaagt 305  Q
    ||||||||||| ||||||||    
T  2751 taagaaagtaccacttaagt 2732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 305
Target Start/End: Original strand, 82348 - 82541
Alignment:
Q  122 gagaagtaggtctaccttggaggtgaaagttgaagatcatatcatacc-ctagttacac---------atcttgggtccatagtacaaaatgacggagaa 211  Q
    ||||||||||||| ||||||||| |||||||| |||| |||||||||| | ||||||||         ||||||||||||||||| ||||||||||||||    
T  82348 gagaagtaggtctgccttggaggcgaaagttggagattatatcataccacaagttacacggtttaaatatcttgggtccatagtaaaaaatgacggagaa 82447  T
Q  212 atagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgttttgtgtgataagaaagtactacttaagt 305  Q
    ||||||||| |||||| ||||| |||||||||||| ||||||  ||||  ||||| ||||  ||||||||| |||||||||||||| |||||||    
T  82448 atagaagcagatgtaaatcatcgtattcaagctgggtggttgcaatgggaaagagcctcatgtgttttgtgcgataagaaagtactccttaagt 82541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 87196 - 87071
Alignment:
Q  180 atcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaactcatcatattcaagctggatggttgagatggagaagagtctcagatgtttt 279  Q
    ||||||||||||||||| |||||| ||||||||||||| || ||||||||||||||||||| | | ||||||||| |||||||| || ||| |  |||||    
T  87196 atcttgggtccatagtataaaatgtcggagaaatagaatcagatgtaactcatcatattcatgtttgatggttgaaatggagaaaagcctcgggggtttt 87097  T
Q  280 gtgtgataagaaagtactacttaagt 305  Q
     ||  |||||||||||  ||||||||    
T  87096 atgcaataagaaagtatcacttaagt 87071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 88609 - 88532
Alignment:
Q  91 cagagtatatggaatgtaacttcatcaaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcatac 168  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| || | |||||| |||||    
T  88609 cagagtatatggaatgtaacttcagcaaaaggagaagtaggtttaccttggagatgaaagatggaaatcataccatac 88532  T

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Target: scaffold0045; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 88685 - 88636
Alignment:
Q  16 tgaacaggaggctagagacttggaggcaaaccctaaaagcgtatggtttc 65  Q
    ||||| |||||||||||| |||||||||| || || ||||||||||||||    
T  88685 tgaacgggaggctagagatttggaggcaagccttagaagcgtatggtttc 88636  T

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Target: scaffold1493 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 156 - 47
Alignment:
Q  198 aaaatgacggagaaatagaagcatatgtaactcatcatattcaagctgga--tggttgagatggagaagagtctcagatgttttgtgtgataagaaagta 295  Q
    |||||||||| ||||||||||||||||||| ||||| ||| ||||| ||   || |||| ||||||||||| ||||| ||||||||| ||||||||||||    
T  156 aaaatgacggggaaatagaagcatatgtaaatcatcgtatgcaagcagggggtgtttgaaatggagaagagcctcaggtgttttgtgcgataagaaagta 57  T
Q  296 ctacttaagt 305  Q
    | | ||||||    
T  56 ccaattaagt 47  T

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Target: scaffold0171 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 5813 - 5867
Alignment:
Q  116 caaaaggagaagtaggtctaccttggaggtgaaagttgaagatcatatcataccc 170  Q
    ||||||||||||||| | || ||||||||||||||||| ||||||||||||||||    
T  5813 caaaaggagaagtagttatatcttggaggtgaaagttggagatcatatcataccc 5867  T

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