View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_119 (Length: 302)
Name: NF15941_high_119
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_119 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 49760369 - 49760644
Alignment:
| Q |
17 |
agggagaagttgtaacctgcaatgcaggtgcaacttctatgaaaaagaaaattaagattgcagagtagagtaggaaagaagacagttgtgtttgtgtagg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49760369 |
agggagaagttgtaacctgcaatgcaggtgcaacttctatgaaaaagaaaattaagattgcggagtagagtaggaaagaagacagttgtgtttgtgtagg |
49760468 |
T |
|
| Q |
117 |
gaaggatcgagttaaaacttaaatgctattttattttttaaaagggttgttttaataaagaaaaacttcaagtttagtacgttacacactactcgaaacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49760469 |
gaaggatcgagttaaaacttaaatgctattttattttttaaaagggttgttttaataaagaaaaacttcaagtttagtacgttacacactactcgaaacg |
49760568 |
T |
|
| Q |
217 |
taatgacaagctataatttgagttacttgccaaaaataattacctaatcctttgagccttgtttctttcgtactct |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49760569 |
taatgacaagctataatttgagttacttgccaaaaataattacctaatcctttgagccttgtttctttcgtactct |
49760644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University