View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_12 (Length: 554)
Name: NF15941_high_12
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_12 |
 | |
|
| [»] scaffold0060 (2 HSPs) |
| | |
|
| [»] scaffold1769 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 22 - 533
Target Start/End: Complemental strand, 8442818 - 8442297
Alignment:
| Q |
22 |
aatttgaagaaatatccagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtga----------tgctaaatttagcagca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8442818 |
aatttgaagaaatatccagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgaatattagtgatgctaaatttagcagca |
8442719 |
T |
|
| Q |
112 |
ttggaaggtatgagttggtcttcaaattttgaaatttagcattttaggcactctagaattgaagatagttgaaagaatagacttgatagaggataaactt |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8442718 |
ttggaaggtatgagttggtcttcagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagaggataaactt |
8442619 |
T |
|
| Q |
212 |
ttccggaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8442618 |
ttccggaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaa |
8442519 |
T |
|
| Q |
312 |
gtgaatgcaatttgccaactgttaggcgcaaaatatggtataattcatgtaaagaggcgtaaaacatggaaacaaatacgttgaggatgacaatgatttg |
411 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8442518 |
gtgaatgcaatttgccgactgttaagcgcaaaatatggtataatccatgtaaagaggcgtaaaacatggaaacaaatacgttgaggatgacaatgatttg |
8442419 |
T |
|
| Q |
412 |
aagggttcatttttgtagaaggagaattatttaagagagattctgcagaaaatgatggaggattagatgaggtatcatcttgagaagtgaaaatagtcac |
511 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
8442418 |
aagggttcatttttgtataaggagaattatttaagagagattctgcagaaaatgatggaggattagatgaggtatcttcttgagaagtggaaatagtcac |
8442319 |
T |
|
| Q |
512 |
aattgtatcatttcgattatca |
533 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
8442318 |
aattgtatcatttcaattatca |
8442297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 8348659 - 8348555
Alignment:
| Q |
11 |
tagcataggagaatttgaagaaatatccagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagc |
110 |
Q |
| |
|
||||||||||||||| |||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
8348659 |
tagcataggagaattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagc |
8348560 |
T |
|
| Q |
111 |
attgg |
115 |
Q |
| |
|
||||| |
|
|
| T |
8348559 |
attgg |
8348555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 300
Target Start/End: Original strand, 7915473 - 7915665
Alignment:
| Q |
112 |
ttggaaggtatgagttggtcttcaaattttgaaatttagcattttaggcactctaga--attgaagatagttgaaagaatagacttgatagaggataa-- |
207 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||| || |||||||| | ||| |||| | ||||||| ||| |||||||||||| ||| |
|
|
| T |
7915473 |
ttggaaggtatgagttggtcttgagattttgaaatttagcatgttctgcactctatacaattcaagacaattgaaaggatacacttgatagaggttaaga |
7915572 |
T |
|
| Q |
208 |
--acttttccggaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttga |
300 |
Q |
| |
|
| ||| |||||||| |||| |||| |||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
7915573 |
ataaatttaa--aaagtggactttctacttttcatattaattatgttttggggcattctataagtttaaagggatttttgaaataacatggttga |
7915665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 120 - 343
Target Start/End: Complemental strand, 8364505 - 8364280
Alignment:
| Q |
120 |
tatgagttggtcttcaaattttgaaatttagcattttaggcactctagaattgaagatagttgaaagaatagacttgatagagg------ataaactttt |
213 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| || ||||||||| |||| || ||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
8364505 |
tatgagttggtcttgagattttgaaatttagcatgttcggcactctacaatt--cgacagttgaaagaatacacttgatagaggttaagaataaacttt- |
8364409 |
T |
|
| Q |
214 |
ccggaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaagt |
313 |
Q |
| |
|
| ||| ||||| |||||||||||||||| |||||||| ||| |||| || |||||| |||| | ||| | |||||||||| ||| || || ||||| |
|
|
| T |
8364408 |
-caaaaactggaacttcaacttatcatgtttattttgttatggagcattctgtaagttaaaagcgactttgggaataacttggctgaactattggaaagt |
8364310 |
T |
|
| Q |
314 |
gaatgcaatttgccaactgttaggcgcaaa |
343 |
Q |
| |
|
||| ||||||||||| || |||||| |||| |
|
|
| T |
8364309 |
gaacgcaatttgccaccttttaggcacaaa |
8364280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 8409904 - 8409801
Alignment:
| Q |
14 |
cataggagaatttgaagaaatatccagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcatt |
113 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| |||||| |||||||||||||| || | |||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
8409904 |
cataggagaatttgaagaaattgccagtggtctgtgatacgctgtttagtacaaag-gaagccaaataccggctatagcgatgctaaatttagcagcatt |
8409806 |
T |
|
| Q |
114 |
ggaag |
118 |
Q |
| |
|
||||| |
|
|
| T |
8409805 |
ggaag |
8409801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 7915312 - 7915374
Alignment:
| Q |
56 |
tgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcattggaag |
118 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
7915312 |
tgtttagtacaaaatcatgccaaataccggctatagcgatgctaaatttagcagcattggaag |
7915374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 276
Target Start/End: Complemental strand, 8348494 - 8348331
Alignment:
| Q |
120 |
tatgagttggtcttcaaattttgaaatttagcattttaggcactctagaattgaagatagttgaaagaatagacttgatagagg------ataaactttt |
213 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||| || || |||||| |||| ||| ||||||||||||| |||||| ||||| |||||| ||| |
|
|
| T |
8348494 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattcgagacagttgaaagaatacacttgaaagaggttacgaataaac-ttt |
8348396 |
T |
|
| Q |
214 |
ccggaaagtggaatttcaact--tatcatgttaattttgttttggggcatcctataagtttaaag |
276 |
Q |
| |
|
| || |||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
8348395 |
caaaaatgtggaatttcaacttatatcaggttaattttgttttggggcattctataagttaaaag |
8348331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 38 - 533
Target Start/End: Original strand, 69161 - 69656
Alignment:
| Q |
38 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcattggaaggtatgagttggtcttcaaa |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
69161 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcattggaaggtatgagttggtcttgaga |
69260 |
T |
|
| Q |
138 |
ttttgaaatttagcattttaggcactctagaattgaagatagttgaaagaatagacttgatagaggataaacttttccggaaagtggaatttcaacttat |
237 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
69261 |
ttttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagaggataaacttttctggaaagtggaatttcaacttat |
69360 |
T |
|
| Q |
238 |
catgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaagtgaatgcaatttgccaactgttagg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
69361 |
catgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaagtgaatgcaattttccaactgttagg |
69460 |
T |
|
| Q |
338 |
cgcaaaatatggtataattcatgtaaagaggcgtaaaacatggaaacaaatacgttgaggatgacaatgatttgaagggttcatttttgtagaaggagaa |
437 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69461 |
cgcaaaatatggtataatccatggaaagaggcgtaaaacatggaaacaaatacgttgaggatgacaatgatttgaagggttcatttttgtagaaggagaa |
69560 |
T |
|
| Q |
438 |
ttatttaagagagattctgcagaaaatgatggaggattagatgaggtatcatcttgagaagtgaaaatagtcacaattgtatcatttcgattatca |
533 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
69561 |
ttatttaagagagattatgctgaaaaagatggaggattatatgaggtatcatcttgagaagtggaaatagtcacaattgtatcatttcaattatca |
69656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 123 - 256
Target Start/End: Original strand, 65306 - 65443
Alignment:
| Q |
123 |
gagttggtcttcaaattttgaaatttagcattttaggcactctagaattgaagatagttgaaagaatagacttgatagagg------ataaacttttccg |
216 |
Q |
| |
|
|||||||| || | |||||||||| |||||| |||||||||||| |||| |||| ||||||||||||| |||||||||||| ||||||||| | |
|
|
| T |
65306 |
gagttggttttgagattttgaaatatagcatgttaggcactctacaatttaagacagttgaaagaataaacttgatagaggttaagaataaacttt--ca |
65403 |
T |
|
| Q |
217 |
gaaagtggaatttcaacttatcatgttaattttgttttgg |
256 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
65404 |
aaaactggaatttcaacttatcatgttaattttgttttgg |
65443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: scaffold1769
Description:
Target: scaffold1769; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 38 - 533
Target Start/End: Original strand, 230 - 735
Alignment:
| Q |
38 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagt----------gatgctaaatttagcagcattggaaggtatgagtt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
230 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgaatattagtgatgctaaatttagcagcattggaaggtatgagtt |
329 |
T |
|
| Q |
128 |
ggtcttcaaattttgaaatttagcattttaggcactctagaattgaagatagttgaaagaatagacttgatagaggataaacttttccggaaagtggaat |
227 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
330 |
ggtcttgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagaggataaacttttcaggaaagtggaat |
429 |
T |
|
| Q |
228 |
ttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaagtgaatgcaatttgcc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
430 |
ttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttgaccttctgtaaagtgaatgcaatttgcc |
529 |
T |
|
| Q |
328 |
aactgttaggcgcaaaatatggtataattcatgtaaagaggcgtaaaacatggaaacaaatacgttgaggatgacaatgatttgaagggttcatttttgt |
427 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
530 |
gactgttaagcgcaaaatatggtataatccatggaaagaggcgtaaaacatggaaacaaatacgttgaggatgacaatgatttgaagggttcatttttgt |
629 |
T |
|
| Q |
428 |
agaaggagaattatttaagagagattctgcagaaaatgatggaggattagatgaggtatcatcttgagaagtgaaaatagtcacaattgtatcatttcga |
527 |
Q |
| |
|
| |||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
630 |
aaaaggagaattatttaagagagattatgctgaaaaagatggaggattatatgaggtatcatcttgagaagtggaaatagtcacaattgtatcatttcaa |
729 |
T |
|
| Q |
528 |
ttatca |
533 |
Q |
| |
|
|||||| |
|
|
| T |
730 |
ttatca |
735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 386 - 533
Target Start/End: Original strand, 985606 - 985753
Alignment:
| Q |
386 |
aatacgttgaggatgacaatgatttgaagggttcatttttgtagaaggagaattatttaagagagattctgcagaaaatgatggaggattagatgaggta |
485 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
985606 |
aatacgttgagaatgacgatgatttggagggttcatttctgtagaaggaggattatttgagagagattctgcagaaaatgatggaggattagatgaggca |
985705 |
T |
|
| Q |
486 |
tcatcttgagaagtgaaaatagtcacaattgtatcatttcgattatca |
533 |
Q |
| |
|
||||||| || |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
985706 |
tcatcttcaggagtggaaatagtcacaattgtatcatttgaattatca |
985753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 386 - 533
Target Start/End: Complemental strand, 1999417 - 1999270
Alignment:
| Q |
386 |
aatacgttgaggatgacaatgatttgaagggttcatttttgtagaaggagaattatttaagagagattctgcagaaaatgatggaggattagatgaggta |
485 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
1999417 |
aatacgttgagaatgacgatgatttggagggttcatttctgtagaaggaggattatttgagagagattctgcagaaaatgacggaggattagatgaggca |
1999318 |
T |
|
| Q |
486 |
tcatcttgagaagtgaaaatagtcacaattgtatcatttcgattatca |
533 |
Q |
| |
|
||||||| || |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
1999317 |
tcatcttcaggagtggaaatagtcacaattgtatcatttgaattatca |
1999270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 44460350 - 44460390
Alignment:
| Q |
41 |
tgttctatgatacactgtttagtacaaaatgatgtcaaata |
81 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||||||| |
|
|
| T |
44460350 |
tgttccatgatacactatttagtacaaaatgttgtcaaata |
44460390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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