View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_127 (Length: 289)
Name: NF15941_high_127
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_127 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 39784700 - 39784426
Alignment:
| Q |
15 |
tatataatagccagagcttgatggggaatgtgagagcatattagcagagttttcatcaaattttaaaaaggttgtccctcaagnnnnnnngaaaagatta |
114 |
Q |
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| T |
39784700 |
tatataatagccagagcttgatggggaatgtgagagcatattagcagagttttcatcaaattttaaaaaggttgtccctcaagtttttttgaaaagatta |
39784601 |
T |
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| Q |
115 |
aggaagagtttcttgctttttcttcagagatcttcttgttctgttgttttcttgttcagcagaaaattgtgatatatacttcaattcttacaaggttaga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39784600 |
aggaagagtttcttgctttttcttcagagatcttcttgttctgttgttttcttgttctgcagaaaattgtgatatatacttcaattcttacaaggttaga |
39784501 |
T |
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| Q |
215 |
acctatatttcatttctttcttctaccttatgctatggaattatgttatgtgctttcttattttctaacttgact |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39784500 |
acctatatttcatttctttcttctaccttatgctatggaattatgttatgtgctttcttattttctaacttgact |
39784426 |
T |
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