View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_13 (Length: 552)
Name: NF15941_high_13
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 17 - 540
Target Start/End: Complemental strand, 2755929 - 2755406
Alignment:
| Q |
17 |
aagaaggtgtttaccaagatcgtcttggttgctacaacaatgctaaatggacggtggagtttgtagatggtggaaacttgattagattgaagagtcatta |
116 |
Q |
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| T |
2755929 |
aagaaggtgtttaccaagatcgtcttggttgctacaacaatgctaaatggacggtggagtttgtagatggtggaaacttgattagattgaagagtcatta |
2755830 |
T |
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| Q |
117 |
tggtaaatacttaacggcatctaatatgccattcttgttaggtagaacggggaaaaaagttttgcaaacacttccatcaaggttgaattcatctttggaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755829 |
tggtaaatacttaacggcatctaatatgccattcttgttaggtagaacggggaaaaaagttttgcaaacacttccatcaaggttgaattcatctttggaa |
2755730 |
T |
|
| Q |
217 |
tgggaacctataagagaaggtaatcaaatcagacttaggactcgttatggccaatttttacgcgccaatggagggttaccaccatggagaaactccgtca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755729 |
tgggaacctataagagaaggtaatcaaatcagacttaggactcgttatggccaatttttacgcgccaatggagggttaccaccatggagaaactccgtca |
2755630 |
T |
|
| Q |
317 |
cccatgatattccatatcgtacaaaaacgacaaattgggttctatgggacattgatcttgtcgagcttcgaccaccaccaccgaagcaaatacaagacgt |
416 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755629 |
cgcatgatattccatatcgtacaaaaacgacaaattgggttctatgggacattgatcttgtcgagcttcgaccaccaccaccgaagcaaatacaagacgt |
2755530 |
T |
|
| Q |
417 |
cccacctattgatgttaaagatctatcttgtaccgttaactctttgtccaatcgttctcgttctccttctcctcaatctcctactctttcaaataatgat |
516 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755529 |
cccacctattgatgttaaagatctatcttgtcccgttaactctttgtccaatcgttctcgttctccttctcctcaatctcctactctttcaaataatgat |
2755430 |
T |
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| Q |
517 |
gatccctttggcgcaattgaccta |
540 |
Q |
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|||||||||||||||||||||||| |
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| T |
2755429 |
gatccctttggcgcaattgaccta |
2755406 |
T |
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